Nitrosospira sp. NRS527: NNRS527_00059
Help
Entry
NNRS527_00059 CDS
T08467
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
niz
Nitrosospira sp. NRS527
Pathway
niz02020
Two-component system
niz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
niz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NNRS527_00059
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NNRS527_00059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
niz03021
]
NNRS527_00059
Transcription machinery [BR:
niz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NNRS527_00059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
BCT66498
LinkDB
All DBs
Position
58707..60176
Genome browser
AA seq
489 aa
AA seq
DB search
MKPTLQFKLSQHLTLTPQLQQSIRLLQLSTAELSQEIERMVQENPLLELDDHIGSDTIDY
RNMPNDIRAEPLSDLIEIPDEASAKLLSIEDSSDTRKMTDESDWFSDDRAVRNTRDDDDE
RDFQQQAAEPPSLREYLNLQLSLSQIPERGRRIVGLLIDSLDDDGYLAQDLEELVELLPP
ELAIDIDDLHNALEQLQRMDPPGIGARNLRECLLMQLHALPGCTPYLDQAVLLVNDDLES
LALRDFATIKKLLHCDDECLRSIRHLITRLNPRPGMAFSSTVARYIIPDVIVTKISGSWV
ASLNPEAMPRLKINRLYADILKRSHDDSARGLSGHLNEAKWLIKNVHQRFSTILKVSSAV
VERQQQFFEHGAVAMRPMVLREIADTLDLHESTISRVTTQKFMRTPRGIFELKYFFGSHV
ATDTGGACSATAIRALIKQMINAENAQKPLSDSQISEILGQQGIMVARRTVAKYRESIQI
PPVNLRKSF
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctactcttcagtttaagctgtcgcagcacctgacgcttactccgcaattgcaa
caatccatacggctgctacagctttccacggcagaactgagccaggaaatagaacgtatg
gttcaagaaaatcctctccttgaacttgacgatcatatcggtagcgatacgatcgactat
cggaatatgcccaacgatattcgggcagagccgttatcggatctgattgagattccggat
gaagccagtgcgaaattgctttctatcgaggacagctccgacacgagaaagatgaccgat
gagtcagactggttctcggacgatagagccgttcgcaacacgcgggatgatgatgacgaa
cgggattttcagcaacaagcggcggaaccgcccagcttgcgtgaatatcttaacctgcag
ctaagtcttagccagattccggagcgtgggcgaagaatcgttggtttgctgatcgatagt
ctggatgacgacggctatcttgcacaggatcttgaagagctcgttgaactgctgccgccc
gagctcgcgatagacatcgacgatcttcacaatgctctggaacagttgcaacgcatggat
cctcccggcattggggcgcgtaacctcagggaatgcctgctcatgcaattgcatgcgctg
ccgggatgtactccttacctggatcaggcggtgctgctggtgaatgacgatcttgaaagc
ctggcattacgggatttcgccaccattaaaaaactgctgcactgtgatgatgaatgtctg
cgatcgatccggcacctgattacccgactgaacccgagacccggcatggcattcagttcc
actgtcgcccgttacatcatacccgacgtaattgtgacaaagatcagcggttcatgggta
gccagccttaatcctgaagcaatgccccgcctcaaaatcaaccggctctatgctgatatc
ctgaaacgctctcatgatgattccgcacgaggcctgtcgggccatctgaatgaggcgaaa
tggctcatcaagaacgtacatcagcgtttcagcacgatactcaaggtatcctcagcagtg
gtcgaacgccagcaacagtttttcgagcatggcgcagtggccatgcgccccatggtattg
cgggaaattgcggatacgcttgacttgcatgaatccacgatttcgcgggtaacgacacaa
aaattcatgaggacgccacggggcatattcgaattaaaatatttctttggcagtcatgta
gcgaccgacaccggcggtgcttgttccgccaccgcaattcgtgctctgatcaagcaaatg
ataaacgccgaaaatgcacagaagccactgagcgatagccagatttcagaaattctgggg
cagcagggaattatggttgcccgccgtaccgtggcaaaatatcgggagtccatacaaatt
cctcccgttaatcttcggaaatctttttaa
DBGET
integrated database retrieval system
