Nitrosospira sp. NRS527: NNRS527_00636
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Entry
NNRS527_00636 CDS
T08467
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
niz
Nitrosospira sp. NRS527
Pathway
niz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
niz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NNRS527_00636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
niz03400
]
NNRS527_00636
Enzymes [BR:
niz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NNRS527_00636
DNA repair and recombination proteins [BR:
niz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NNRS527_00636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
DUF3638
ERCC3_RAD25_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
BCT67058
LinkDB
All DBs
Position
complement(671186..674692)
Genome browser
AA seq
1168 aa
AA seq
DB search
MERDIYRLRPLKTVQMPFKLTIPQRGSMTRHGHFDGSGDALALAKLAQDAKPVAIITASA
LAAQRLLEEIPFFAPELKTRLLPDWETLPYDTFSPHQDLVSDRLATLYQLMSGACDVLII
PVTTALYRMPPRAYLAAHTFFLKRGETLNLNTLRGQMTLAGYSHVTQVLSPGEYSVRGGL
VDLFPMGSPLPYRIDLLDNEIETIRTFDVDTQRSVYPVTEIRLLPAREFPLDEEARSRFR
GSFREHFEGDPSKSRIYRDISKGATPAGIEYYLPLFFEDTATIFDYLPPATLLCLHHEIH
PAVENFWRDTQSRYQLLRGDNNHPLLAPGELFVTTEAFFGALKPYARIEIPSDAQTSKAE
TQSWTRPLPPLQIDRRADNPAERLDNFIAEFASEFTSPGGRTLLLAESLGRRELISDHLK
QYGLDIDICDDYAQFRSSNKAFMLGVGPLHNGFIFRGEGTAFITENELYARHLHGRRERD
SRKTSAVADAMLRDLSEIKSGDPVVHEQHGIGRYLGLVSMDMGEGATEFLSLEYAGGDKL
YVPVSQLHLIGRYSGATPEAAPLHKLGSGQWDKAKRKAMQQVRDTAAELLNLYAQRTARV
GHAFRLRQHDYEAFVEGFGFEETPDQATAIDAVIEDLASAKPMDRLICGDVGFGKTEVAL
RAAFVAVADGKQVAVLVPTTLLAEQHFQNFSDRFSLIANEWPIKIAELSRFRSSKEQTQA
LAGLATGQIDIVIGTHKLVQKGVKFSNLGLVIIDEEHRFGVRHKEQLKSLRSEVDVLTLT
ATPIPRTLAMSLEGLRDFSVIATAPQRRLAIKTFVNRFSEGIIREACLRELKRGGQIYFL
HNEVSTIQPMHDKLARLLPEARVSIAHGQMRERELEHVMKDFYQQRFNLLLCTTIIETGI
DVPTANTIVINRADKFGLAQLHQLRGRVGRSHHQAYAYLLVPEEEALGTQARKRLEAIQA
MEELGAGFYLAMHDLEIRGAGEVLGESQSGEMQEIGFTLYSTMLDAAVRSLKEGKEPDMQ
HPLGVATEINLHVPALLPEGYCNDVHERLVLYKRMANCTNDDQLDDIQIELSDRFGLLPD
PVRALLDCHRLRIAATPMGITRIEASADAIQVQFIPNPPVDAATIVALLQRSRDYELSGP
DRLKIKVRIPGVKERVTRIKNLITELSR
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtggagcgcgacatttatcggttgcggccattgaaaacagtacagatgccattcaagttg
actattccccagcgcggttcgatgacccgccatggtcatttcgacggttcaggcgatgcc
ctggctttggcaaaactggcgcaggatgcaaaacctgtcgccatcattacggcaagcgca
cttgccgcccaaaggctgctggaggaaatccccttctttgcccccgagttgaaaacacgg
ctgctgccggactgggagactttgccctacgataccttttcacctcatcaggatctcgtc
tcggaccggcttgccacgctttaccagctcatgagcggcgcctgcgatgtactgatcatt
cctgtcaccaccgcgttataccggatgccaccgcgagcgtatctggcggcgcatactttt
tttctcaaacggggagaaacgcttaatctgaacacgctacgcggccagatgactttggcg
ggctacagtcatgtaacgcaagttctctcgccgggggaatacagcgtgcgtggcgggctg
gtggatctgtttcccatgggcagcccgctgccttaccgcatcgacttgctggataacgaa
atcgaaaccatccgtacgtttgatgtggatacgcagagaagtgtctaccccgtcaccgag
ataagattactgccggcgcgtgaattccccctcgacgaagaagcccgcagtcgttttcga
ggtagttttcgcgaacatttcgaaggcgatccatcgaaaagtcgcatctatagagacata
agcaagggcgccacgcctgcgggtatcgaatattatttgccgcttttttttgaggacacc
gcgacaatcttcgattaccttccgccagcgacgctgctatgcctgcaccatgaaatccat
ccggcagtggaaaacttctggcgcgacacgcaatcacgctatcaactgctgcgtggcgac
aataatcatccattgctggcaccgggagaattattcgtcacgacggaggctttcttcggc
gcactgaagccctacgcgcgcatcgaaatcccgtccgatgctcaaacctcgaaagcggaa
actcaaagctggacccgcccgctaccgcctcttcagattgatcgccgcgctgacaatcca
gctgagagacttgataattttatcgcggaattcgcctccgagttcacctctcccggtggg
cgaacattgctattggcggagagcctcggcaggcgggagctgatttcagatcatctgaaa
cagtatgggctggatatcgatatctgcgatgactacgcgcaatttcggtcaagtaacaaa
gctttcatgcttggcgtggggcccttgcacaacggttttatattccggggcgaaggaacg
gccttcattacggaaaacgagctgtatgcaaggcatttgcacggccgccgcgaacgtgat
tcgcgcaagacttccgcagtggccgatgcgatgttgcgcgatttgtccgagatcaaatcc
ggcgacccggttgtgcatgagcagcacggcatcggccgctacctcgggctggtaagcatg
gatatgggagaaggcgcaacagaatttctatcacttgaatacgccggtggagataagtta
tatgtaccggtttcgcaactgcaccttattgggcgatacagcggggcgacgcctgaagcg
gcgccgctgcataaactcggcagcggtcaatgggataaagccaagcgtaaagcgatgcaa
caggtgcgcgataccgctgcggaactgctgaatctttatgctcaacgtaccgcccgtgtg
ggccacgcgttcaggctaaggcaacatgattatgaagcatttgttgaaggtttcggtttc
gaggaaacgcccgatcaggccaccgcgatcgatgcggtaatcgaggatctggcctcggcc
aagcccatggaccgcctgatctgcggagatgttggtttcggcaagaccgaagtggccttg
cgagcagcctttgtcgcagttgccgatggtaaacaggtggctgtactggtacccaccacg
ctcctggctgagcaacatttccagaatttttccgatcgcttcagcctgatcgcgaacgaa
tggcccataaaaattgcggagctgtcgcgtttccgctcgtcgaaggaacaaacccaggcc
ttggcggggttggctaccgggcaaatcgacatcgtcatcggtacgcataaactggtccag
aaaggggtgaaattcagcaacctgggcctggtcatcatcgatgaggagcatcgcttcggt
gtacgtcacaaggaacaactgaaaagtttgcgttctgaagtggacgtattgacgcttacc
gccacacccattccccgtacgcttgccatgtcgctggaaggtctgcgtgacttttccgtg
atcgctaccgccccgcaaagacggctcgccatcaaaacttttgtcaatcgtttttccgaa
ggcatcatccgtgaagcatgcttgcgcgaattaaaacgcggcgggcagatatatttcctg
cacaacgaagtgagcactattcaacccatgcatgacaagcttgcccggttgttgccggag
gcgcgcgtaagcattgcccatgggcaaatgcgcgaacgcgaactggaacatgtgatgaag
gatttttatcagcagcgcttcaatctgctgctttgcacgaccatcatcgagacgggtatc
gatgttcccactgccaataccattgtcatcaatcgcgcggacaaattcggtctggcgcaa
ttacatcagttgcgcggacgcgtaggccgctcccaccatcaggcatacgcttatctattg
gtaccggaggaagaggcgcttggaacacaggccaggaaacgtctggaagccattcaagcc
atggaagaactgggtgcgggtttttatctcgccatgcatgatctggaaattcgcggcgcc
ggcgaagtactgggcgaatcgcaaagcggcgagatgcaggaaatcggcttcactctctac
tccaccatgcttgatgctgcggttcgatcactaaaggagggcaaagaacccgatatgcag
catcccctgggcgttgccaccgaaataaatttacatgttcccgccttgctgcctgaggga
tactgcaatgacgtacatgaacgcctggtactgtacaagcgcatggcgaattgcacaaat
gatgatcagctggatgatattcaaatagaattatcggaccgcttcggtctcttgccggat
cccgtcagagcactgctggattgccaccgtttgcgtattgctgctacacccatgggaatt
actcgcattgaagcgagcgctgacgccatccaggtgcaattcattcccaacccaccggtc
gatgccgcaacaatcgtcgcactccttcaacgcagccgcgattatgaactttccggtccc
gatcgcctgaaaataaaagtacggatcccgggagtgaaagaacgggtaacgcggataaaa
aatttgatcaccgaattgagtcgctga
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integrated database retrieval system
