Nitrosospira sp. NRS527: NNRS527_00780
Help
Entry
NNRS527_00780 CDS
T08467
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
niz
Nitrosospira sp. NRS527
Pathway
niz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
niz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NNRS527_00780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
niz03021
]
NNRS527_00780
03400 DNA repair and recombination proteins [BR:
niz03400
]
NNRS527_00780
Enzymes [BR:
niz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NNRS527_00780
Transcription machinery [BR:
niz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NNRS527_00780
DNA repair and recombination proteins [BR:
niz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NNRS527_00780
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BCT67198
LinkDB
All DBs
Position
833492..837721
Genome browser
AA seq
1409 aa
AA seq
DB search
MKALLDLFKQVTQKEEFDSIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLQRCQLLTDDDYRAKTEEYGDDFRASM
GAEGVRDLLGNLNIRVEIDNLRREMGTTGSETKMKKISKRLKVLEAFCKSGIKPEWMVLA
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKKMALELFKPFIFNKLEIMGIASTIKAAKREVENESPVVWDILEDVIRQHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEC
RTLMMSTNNVLSPANGEPVIVPSQDIVLGLYYTTREKINARGEGMMFANISEVSRAYESR
IIELNARITVRIKEYDVDADGERHEKTTRYDTTVGRALLSEILPAGLPFPLMNKVLKKKE
ISKLINASFRRCGLRETVIFADKLMYAGFTYATRAGISICLDDMLTPVQKNDIIGASERE
VQEIEVQYTSGLVTQGERYNKVVDIWGRAGDQVAKAMMDQLGVEPILDLETGEVKKDKKG
KALTQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVTQDDCGTSNGVVMKALVEGGEV
IEALRERILGRVVANDVINPEQQAVIYPAGALLDESAVDTIEALGIDEVKVRTPLTCETR
YGLCAKCYGRDLGRGTPVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTAVASQVE
SKSNGIVRYSPTMRYVTNSRNELIAISRSGEVVVHDDNGRERERHKAPYGATLLIRDGEV
VKAGQILAAWDPHTRPIITEYAGKVRFENVEEGVTVAKQIDEVTGLSTLVVIDPKRRGVV
QTKGLRPMVKLLDEDGKEVRLAGSVLSVSITFQIGSVITVRDGQQVSVGEVLARIPQESS
KTRDITGGLPRVAELFEARSPKDAGVLAEVTGIVSFGKDTKGKQRLVITDLDGISHEYLI
PKEKHVTAHDGQVVNKGESIVDGPADPHDILRLLGVEALARYITDEVQDVYRLQGVKIND
KHIEVIVRQMLRRIQIVDAGDTRFIPGEQVERADMLSENESVVAEDKQPATYEFMLLGIT
KASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHNTRK
KQKLLLNAGEKSGLGEEDAGEMRNSGYTV
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgcttgatttattcaaacaggttacccagaaggaagagttcgattcgatc
aagatcggtctggcttctcccgagaaaatacgctcttggtcctatggtgaggtcaagaag
ccggaaaccatcaattaccgtacattcaagccggaacgggacggcctgttctgcgcaaag
atcttcggcccggtaaaggattacgagtgtctgtgcggaaaatataaacgtctgaaacat
cgcggcgtgatctgcgagaaatgcggtgttgaagttacgctgtcgaaggttcggcgtgag
cgtatgggtcatattgaactggcttcgccggtagcgcacatctggttcctgaaatcgttg
ccatcccgcttgggcatggttctggatatgaccttgcgtgatattgagcgcgtactctat
ttcgaagcttatgtggtaacggatcccggcatgacgcctcttcagcggtgtcagttgttg
acggatgacgactatcgtgcaaaaacagaagaatacggcgacgattttcgagcgagcatg
ggcgcggaaggtgtacgcgatttattgggcaatctcaacattcgtgttgagattgataat
cttcggcgcgagatgggaacaaccggctcggaaacgaagatgaagaaaatctccaagcgc
ctgaaagtattggaggcattctgtaaatccgggattaaaccggagtggatggttttggct
gtcctgcccgtactgccgcccgaattgcgccccttggtgccgctggatggtgggcgcttc
gccacttctgatctgaatgacttgtatcgtcgcgttataaaccgcaacaatcgcttgaag
cgtttgctagagttgaaggcgccggaaattatcgtgcgcaatgagaagcgcatgctgcag
gaggcggttgattcattgctggataacggccgccgcggcaaagccatgaccggcgccaat
aagcggccgttaaaatcactcgccgacatgatcaagggcaaaggtgggcggttccgccag
aacctgctgggcaaacgtgtggattactccggacggtcggtcatcgtggtcggcccgcag
ctcaagctgcaccaatgtggcttgccgaagaaaatggcgttggaattattcaagccgttt
atcttcaataaactcgaaataatgggtatcgcgagtaccataaaggcggccaagcgggag
gtggaaaacgagagccctgtcgtctgggatattcttgaggacgttattcgccagcatccg
gtaatgctgaaccgggctccgacattgcatcggcttggaattcaggcattcgagccggta
ctgatcgaaggcaaggcaatccagttgcatccattggtatgcgccgcattcaacgccgac
ttcgacggcgaccagatggcggttcacgtgccgctatcgctggaagcgcaaatggaatgc
cgcacactcatgatgtcgaccaacaatgtcttgtcgccggcaaatggggaaccggtcatc
gtgccgtctcaggatatcgtgctggggttgtactacaccacacgggaaaaaatcaatgct
cgtggcgaaggcatgatgttcgccaacatcagcgaagtttctcgcgcctatgaaagccgc
ataatcgagctgaatgccagaattacagtgagaatcaaggagtatgacgtagacgccgat
ggcgaacgtcatgagaaaaccacgcgttatgacaccactgtagggcgagcgctgctgtcc
gaaattctccccgccggcctgccttttccgctgatgaacaaggtgctcaagaagaaggag
atttccaagctcatcaatgccagcttccggcgctgcggacttcgcgaaacagtcattttt
gcggacaaattgatgtacgcggggttcacttatgccacgcgcgcggggatatcgatctgt
ctggacgacatgctgacgccggtacagaagaatgacatcatcggtgcttcagaaagggaa
gtgcaggaaattgaggttcagtacacttcaggtttggtgacacaaggcgaacgctataac
aaggtagtggatatatggggtcgtgctggcgatcaggtggctaaagccatgatggatcag
ttgggggtcgagccgatactcgatctggaaactggagaagtcaaaaaagacaagaaaggc
aaggcactgacgcaagaatccttcaattcgatatatatgatggcagattcgggtgcgcga
ggttccgctgcccagattcgccagttggcaggtatgcgcggcttgatggccaaacctgat
ggttcgatcatcgagacgcccatcacggcgaacttccgcgaagggttgaacgtactgcag
tatttcatttcaacccatggtgcccgcaaaggcttggccgataccgcattgaagactgcc
aactccggttatcttacccgtcgcctcgtcgatgtaacacaggatctcgtggtgacccag
gacgactgcggcacgagtaatggcgttgtaatgaaggccttggtcgaaggtggcgaggtc
attgaagcactgagagaacgcatactcggacgggtggtcgcgaacgatgtcatcaatccg
gagcagcaagccgtgatttatccggccggcgccctgctggatgagagcgcagtcgacacc
attgaagcattgggtatagatgaggtaaaagtacgtaccccgctgacctgcgaaacccgt
tatggtttatgtgccaagtgctatgggcgcgacctgggacgcggcacgccggtgaacgta
ggtgaagccgtgggggtgattgctgcccagtcgataggtgagccgggtactcagctcacg
atgcgcacgttccacatcggtggcgctgcttccagaaccgctgtagcaagtcaggtcgag
agcaagtccaacggtattgtgcgttattctccgaccatgcggtatgttaccaattcgcgc
aacgagctgattgcaatctcccgcagcggcgaagtggtggtacatgacgataacggccgc
gagcgcgaacgtcataaagcgccttatggagcgacattgctgatccgcgacggtgaagtg
gtcaaagcagggcagatcctggcggcgtgggatccgcatactcgccccatcattaccgag
tacgccggcaaggttcgcttcgagaacgtggaagaaggcgtgacggtggctaagcagata
gacgaagtcactggcttgtctacgcttgtcgtgattgatccgaagcggcgtggcgtggtg
cagacgaagggtttgcgtccgatggtgaagcttctggatgaagatggcaaggaagtgcgg
cttgccgggagtgttttatcggtcagcatcacctttcaaatcggttccgttattacggtc
cgggatgggcagcaggtcagcgtaggcgaagtactggcgcgtatcccgcaggaaagttca
aaaacacgcgacatcaccggcggcctgccccgtgtcgcggaactgtttgaagcgcgttct
cccaaggatgccggcgtattggcggaggtcaccggtatcgtatccttcggcaaggatacc
aaaggtaagcaacgcctggtaattaccgatctggacgggatctcgcatgagtatctgatt
cccaaggaaaagcacgtcacggcccacgatggccaggtcgttaataaaggagagagcatc
gtcgatgggcccgccgatccgcacgatattctccgtttgctaggcgtagaagcgcttgca
cgttatatcactgacgaggtccaggatgtgtatcgactgcaaggtgtcaagatcaatgac
aagcacatcgaagtaatcgtgcgccagatgttgcggcgtatccaaattgtggatgcgggg
gatacacgctttattccgggtgagcaagttgaacgtgcggacatgctgtcggaaaacgaa
agcgtggtggccgaggacaagcagccggcaacctatgaattcatgctcctgggtatcacc
aaggcgtcgctttccaccgattcgttcatttcggcagcttcctttcaggaaaccacacgc
gtgctcactgaagcggctatcatgggcaagcgggatgatctgcgaggcttgaaagaaaat
gtcatcgtcggtcggcttattcctgcgggcacgggtcttgcctttcataatacgcgcaaa
aaacagaaactgttgttaaacgcaggagagaagtctggtctgggagaggaagatgcgggg
gaaatgcgaaatagcggatatactgtctaa
DBGET
integrated database retrieval system
