Nitrosospira sp. NRS527: NNRS527_01090
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Entry
NNRS527_01090 CDS
T08467
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
niz
Nitrosospira sp. NRS527
Pathway
niz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
niz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NNRS527_01090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niz03019
]
NNRS527_01090
03009 Ribosome biogenesis [BR:
niz03009
]
NNRS527_01090
Enzymes [BR:
niz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NNRS527_01090
Messenger RNA biogenesis [BR:
niz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NNRS527_01090
Ribosome biogenesis [BR:
niz03009
]
Prokaryotic type
rRNA processing factors
NNRS527_01090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BCT67505
LinkDB
All DBs
Position
complement(1157438..1160278)
Genome browser
AA seq
946 aa
AA seq
DB search
MKRMLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEY
GGERHGFLPFKEISRSYFKENADPARVRVQDALREGQELIVQVDKDERGTKGAALTTYIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRAELRDVMAQLSIPSGMSIIARTAGIGRSEEELQ
WDLNYLLQLWRAIEDASSSQSGAFLIYQESSLVIRAIRDYFHQEIGEILIDTESIYEQAC
QFMSHVMPANVNRVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDHTEALVSV
DVNSARATRGSDIEQTALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMEIARNQREVENR
LHDALRYDRARVQMGKISRFGLLELSRQRLRPSLGESSYISCPRCHGTGHIRGTDSSALH
ILRIIQEEAMKENTAVLHAQVPVDVATYLLNEKRSEIHAIEARLKVSVVLIPNIHLETPN
YNITRLRHDDVKLSEIQTSYQMVEKPAPEISLPSAAQEAKPARQQAAVRGITPPQPAPIR
EHKPHHEPEQLSFLDRIFSWFKQMGVAEKNMRPEQVKAGPQRVDRGRGRRERGREVRDGE
HEKTPRATQRGRDDRGEHGGEAANASSLARDVAPQRGERSDAKLQGERSAQKKHPRPPRE
EKIRTELKPRPEEQPVAEETLQQGEDSGRRRRRGGRQRDRGDRTERTPHENKQPAVTDSH
TQRAADQATHEKSPIPETLSASMQEASALILTLPPLQGEGAETPSESTGNPHSESLHEDE
NMPVIDMPVITQPVSAAPTSPLPVPIAPEPETEQDKQQTVQEPAHEPIKELATASSPASI
TTIPEPSPDEIEIGNTNNGAAAADIEVMIPVSEREETRLPQRSPAIEPLNLVASGLIMIE
TQPEKIKTAETEAAVESALPQRRRKRTPPPPVVNQEEPLVQVETHK
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctatttaatgcgacacagccggaagaactgcgtgtcgccattgttgat
ggtcaaaaactgattgacctcgacattgaatctgccggcaaagaacaacgcaagagcaat
atctacaaagccgttattacccgccttgagccgagtctcgaagccgcttttgtcgagtac
ggcggggaacggcatggctttctgccattcaaggaaatttcccgctcttatttcaaggaa
aatgcagacccagcccgcgttcgcgtccaggatgcgctccgtgaaggccaggagctcatt
gttcaggtggacaaggatgaacgcggaaccaagggggctgcactcaccacctatatttcc
ctggcaggccgctatctggtcctgatgcccaataatcctcgcggcggaggtgtatctcgc
cgcatagagggcgaagaccgcgcggaactgcgtgacgtcatggcacaactgagcattcct
tccggcatgagcattatagcccgtaccgctggaatagggcgaagtgaagaagaattgcag
tgggatctcaattatttgctgcaattgtggcgcgccattgaagatgcttccagcagccaa
agcggcgctttcctgatttatcaggaaagcagcctggtaatccgcgccatacgagattac
tttcatcaggagatcggagaaatcctgatcgatactgaaagtatctacgagcaggcgtgc
cagttcatgagccacgtcatgccggccaatgtcaaccgggtcaagctctaccgtgacgat
gtgccactattttcacgttttcagattgagcaccagattgagaccgcttattcgcgtcaa
gtcacactaccctcgggcggtgctatcgttatcgaccacactgaagcactggtgtcggtt
gacgtaaactcggcacgggccacccgcggttcggatatcgagcaaaccgcgctcaacacg
aacctggaagccgccgaagaaatcgcacggcagctgcgtctgcgcgacctgggcggactc
gtggtgattgacttcatcgacatggaaatcgctcgtaaccagcgtgaggtggaaaaccgg
ctgcatgatgcgttgcgttatgaccgcgcacgcgtgcagatgggcaagatttcccgtttt
ggtttgcttgaactatcgcgtcaacgcctgcgcccttcgctgggtgagagcagttatatc
tcctgtccgcgttgtcacggtaccggacacatccgcggcactgattcctctgcattgcac
attctcaggataattcaggaagaagcgatgaaagagaataccgccgtgcttcacgctcaa
gtaccggttgatgtggctacctatctactgaatgaaaagcgttcggaaattcatgcaatc
gaagcccgattaaaggtaagtgtagtactgattccgaatattcatctcgaaacaccaaac
tacaacatcacccgcttgcgtcatgacgatgtgaaactgagtgaaattcaaaccagctat
caaatggtggagaaaccagccccggaaatttcgttaccctcagctgcgcaagaggccaag
ccggcacggcagcaagctgctgtacgaggtattacgccgccgcaacccgctccgatacgt
gagcataaacctcatcatgaaccggagcagctttcttttctggatagaatattcagctgg
ttcaagcagatgggtgtggcagaaaaaaacatgcggccagagcaggtaaaggccggtccg
caacgagtagaccgcggccgtggtcgacgagagcgcgggcgcgaagtgcgcgatggcgag
cacgaaaaaacaccgcgagccactcagcgtgggcgcgacgatcgtggtgagcatggcggt
gaagccgctaatgcatcaagtcttgcccgggatgttgcgcctcagcgtggggaacgtagt
gatgcgaagttgcagggtgaacgctccgctcaaaaaaagcatccgcggccaccacgcgaa
gagaaaatccgaaccgaactcaaaccacgaccagaagaacagcctgtagctgaagaaacc
ttgcagcagggtgaagacagcggacgacgtagacgtcgtggcgggagacagcgtgatcgg
ggtgatcgcacagagcggactccccatgaaaataaacagccagcggtgacagattctcac
actcagcgagctgctgaccaggcgacgcatgaaaaaagccccattccggaaaccctttcc
gcatcaatgcaggaggcatcggcgctcatccttaccctccctcctctgcagggagaggga
gcagagacaccttcggagtcaacgggtaaccctcattctgaatctttgcatgaggatgaa
aatatgccggtaattgatatgccggtaattacccagccagtgtcggcagcaccgacctcg
cccttacctgtcccgatagcgcccgagccggaaacggagcaggataagcagcaaaccgtt
caggagcccgctcatgaacctatcaaggaactggcaacagcaagctcgcccgcctctatc
acaaccataccggaaccgtctccggatgaaattgaaattggcaacacaaataatggagct
gctgccgccgacatcgaggtaatgatccctgtatccgaacgggaagaaacccgtttgccc
cagcgatcgccggcaatcgaaccgttgaacctggtggcgagtggattaatcatgatcgaa
acccaaccggagaagataaaaacggctgaaaccgaggcggcagtagaatcagcgctaccg
caacgccggcggaaaagaacacctcctcctccggtagtgaaccaggaagaaccgttagtg
caagtcgaaacgcataaatag
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