Nitrosospira sp. NRS527: NNRS527_01224
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Entry
NNRS527_01224 CDS
T08467
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
niz
Nitrosospira sp. NRS527
Pathway
niz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
niz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NNRS527_01224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
niz03400
]
NNRS527_01224
Enzymes [BR:
niz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NNRS527_01224
DNA repair and recombination proteins [BR:
niz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NNRS527_01224
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BCT67637
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Position
1298431..1300971
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AA seq
846 aa
AA seq
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MSNSDSLKVYREKRDFSITSEPSGIGTPSKARKTALSFVVQKHWATRLHYDFRLELDGAM
KSWAVPKGPSFDPNDKRMAVHVEDHPISYNSFEGEIPRGQYGAGKVIIWDKGTWIPLEDP
HKGYRDGKLKFELRGHKLKGHWALVRMRRKEEEKREAWLLIKEKDDYVRSSNEYSVVDEM
PESVAGLEPLEVQKAAGPVSTTSTRTGSKSGKNEPGLPENAVKADLPHILRPQLATLVDG
PPNDPVEWIYEIKFDGYRMLTRIDGSDIKLFTRNGNDWSERLPHLIKAIARMRLKSGWLD
GEIVVLNDKNIPNFQALQNAFESARTQGIIYYLVDMPFYNGYDLRGVSLVERRALLRTLF
EPPPPEPIRFSDIFDAPPKDIMASACRLGLEGLIGKRKTSRYASRRSPDWIKLKCTQRQE
FVIGGFTDPKGSRAGIGSLLLGYYDEDKKLQYAGNVGTGFSDNTLHDLRVKLDKVAAERP
PFAKAGDIEKNAHWVKPSLVAEVSFGEWTRDGHIRHSVFQGLRSDKKAETIVREKAVHTA
DAKPANAPSRPSLKVSHPERVIDPSTGFTKIELIRYYLLVAPLMLEHLKNRPVSLVRAPD
GITGQLFFQKHWEKENMAGVNQLDPSLDPGHESLIEVASAEGLLASAQMNVIEFHTWNAT
KNAIGKPDRMTFDLDPGEEVKWPLIQEAAQLVHVFLRELGLESFLKTSGGKGLHVIVPIK
RLHDWDTVKNFSQAIVQHLAETIPQRFVAKSGPRNRVGKIFIDYLRNGFGATTVSAWSVR
ARPGLGVSVPLAWEELELLTSASRWSALNIHERLDKGNAPWADYSTTKQSVVPAMKTLGF
KLISRR
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaactcggattcgctcaaggtctatcgggaaaaacgtgatttttccattacatcc
gaaccttccggcatcggtacccccagtaaggcaagaaagacagccttgtcatttgtcgtt
cagaagcactgggcaacgcggctccattacgacttcaggcttgaacttgatggagcgatg
aaaagttgggccgttcccaaagggcccagcttcgacccgaatgacaaacgcatggcggtt
catgtcgaggaccatcccatctcatataacagttttgaaggcgagattccgcgcgggcag
tatggtgcgggtaaagtcattatctgggacaagggaacgtggattcctcttgaggacccc
cacaagggttatcgtgacggcaagctgaagtttgagctgcgcgggcacaaattgaagggt
cactgggcgttggtacgcatgagaaggaaggaggaagaaaaacgggaggcatggctgctc
atcaaggaaaaggatgattatgttcgctcatccaacgaatatagcgtggtggacgaaatg
cccgagagtgttgccgggcttgaaccgttggaggttcaaaaagctgctggaccggtgagc
acaacgtcaaccaggactggatcaaagtccggaaaaaacgaacctgggctgccggaaaac
gcagttaaagcggaccttccccacatcctgcgcccgcagctcgctacgctggtggatggg
cctcccaacgatccggttgagtggatttacgaaatcaagttcgacggctatcggatgttg
accagaatagatggcagcgacattaaactctttactcgaaatggaaatgactggtcagag
agattgcctcatcttataaaagcaatagcgaggatgaggctgaagtccggatggctcgac
ggcgaaattgtagtgctgaatgacaaaaacataccgaattttcaggctttgcaaaatgca
tttgaaagtgcccggactcaaggcatcatttattacctggtcgatatgccgttctacaat
gggtatgatttgagaggggtttccctggttgaacgaagggcattactccgaacccttttt
gagccacctccgccggaaccgatacgcttcagcgatattttcgatgcgccgccgaaagat
ataatggcctcggcctgccgcctggggctggaaggcttgatcggtaagcgcaaaacttcg
cgttatgcttcgcgccgctctcccgactggataaagctgaagtgtacgcaacgccaggaa
tttgtaattggcggttttaccgaccccaagggttcccgggccggcataggttcgcttctg
ctcggctactatgatgaagacaagaagcttcagtatgctggaaacgtaggcaccggattt
agcgataacacgctgcatgatctcagggtgaaattggacaaagttgcggctgagcgtcca
ccatttgccaaggcgggcgatatcgaaaaaaacgcgcattgggtaaagccctcgctggtg
gctgaagtttcctttggagaatggactcgagatggacatattcgccactcggtttttcaa
ggcttgagatcggacaagaaagcggagaccattgttcgggagaaggcggtacataccgct
gatgcaaaacctgcgaacgcgccatccagaccgtcattgaaggtttcgcaccccgagcgt
gtcattgatccgtcgaccgggtttacgaaaattgagctcattcgctactatttgctggtc
gcgcctttaatgctggagcatctcaaaaaccggcctgtatcgctcgttcgcgcgcccgat
ggaatcacaggtcagctgttttttcagaagcattgggaaaaagagaatatggcgggagtc
aatcagcttgatccgtctctggatcccgggcatgagtcattgattgaagttgccagcgcc
gaaggtctattagcgtccgctcaaatgaatgtaatcgagtttcatacatggaatgccaca
aaaaatgctattggcaaaccggacaggatgacattcgatctggatcctggcgaagaggtg
aagtggccgctcatccaggaagcggcacagcttgttcatgtatttctcagggaactgggg
ttggaatctttcctgaaaacgagtggaggcaagggtttgcacgtcattgtgccgataaag
aggctgcatgattgggacaccgtaaaaaatttctctcaagccattgttcaacacctcgcc
gaaaccataccgcaacgcttcgttgccaaaagtgggccgcgaaatcgcgttggaaagatt
ttcatagactatcttcgcaatggtttcggggcaacgaccgtgtcggcctggtcagtacgc
gcacgtccgggcttgggcgtgtcagtgcctttggcatgggaagaactggagttgcttacg
agcgccagccgctggtcggccttgaatatccacgaacggttggataagggcaacgcccca
tgggcagactacagcactacgaagcaatcagtagtgccggccatgaaaacgctgggattc
aagctgatcagcagacggtga
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