Nitrosospira sp. NRS527: NNRS527_02234
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Entry
NNRS527_02234 CDS
T08467
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
niz
Nitrosospira sp. NRS527
Pathway
niz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
niz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NNRS527_02234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
niz03021
]
NNRS527_02234
03019 Messenger RNA biogenesis [BR:
niz03019
]
NNRS527_02234
Transcription machinery [BR:
niz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NNRS527_02234
Messenger RNA biogenesis [BR:
niz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NNRS527_02234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
S1CSD-TOTE-2
NACHT
AAA_22
nSTAND_NTPase7
Motif
Other DBs
NCBI-ProteinID:
BCT68630
LinkDB
All DBs
Position
2343767..2345026
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AA seq
419 aa
AA seq
DB search
MHLSDLKNFHVTELVEMAIANEIDGANRLRKQDLIFALLKNQARKGESIYGEGTLEVLQD
GFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRTPKDGERYFALVKVDKVN
SEPPENSKHKILFENLTPLFPTERLLLERDIKAEENVTSRIIDLIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIAANHPDVILMVLLIDERPEEVTEMIRSVRGEVVSSTFDEPAVRHV
QVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNMEIHLDRRMAEKRTYPAINV
NRSGTRKEELLIKPDVLQKIWVLRKLLYPMDDMEAMEFLLDKIKATKNNADFFDSMRRV
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcacctatccgaccttaagaacttccacgtcaccgaactggtggaaatggctatcgcc
aacgaaattgacggcgccaaccggctacgaaaacaggacctgattttcgccttactgaaa
aaccaggcgcgcaagggggagagcatttacggcgaaggcaccctggaagtgctccaggat
ggcttcggcttcctgcgatctccggacacctcctatttggccggacccgacgatatttat
gtctcccccagccagataagacgtttcaacctgcacacgggtgattccatagaaggcgaa
attcgcacccccaaggatggcgaacgctactttgccctggtcaaggtggataaggtcaac
agcgaaccgccggaaaattccaagcacaagattctgtttgaaaacctcaccccgctattc
cccaccgagcgactactgctcgaacgtgacatcaaggctgaagaaaacgttaccagccgc
atcatcgatctcattgctcccatcgggaaaggccagcgcggcctgctggtagcgagcccc
aagtcgggaaaaacggtcatgcttcagcatatcgcccatgcgatcgcggccaatcacccc
gacgtcatcctgatggtattgctgatagacgagcgtcccgaagaagtaacagagatgatc
cgctcggtcaggggtgaggtggtttcctccactttcgacgaacctgcagtacgtcacgtg
caagtggccgacatggtgattgaaaaagccaagcggctggtcgaacacaagaaagatgtg
gtgatactgctggattccatcacgcgactggcgcgcgcttacaataccgtggttcctgct
tccggcaaggtactgaccggcggcgtcgatgccaatgcattgcaacgccccaaacgtttc
ttcggggccgcccgcaacattgaggaaggcggttcccttaccatcatcgccaccgccctg
gtggatacgggctcgcgcatggacgatgtgatctatgaagaattcaaggggaccggcaac
atggaaatccatcttgaccggcgcatggcggaaaaacgcacttaccccgccatcaacgta
aaccgctccggtacccgcaaggaagaattgctcatcaaaccggatgtactacagaaaatc
tgggtgctgcgcaaattgctctatccgatggatgacatggaagcgatggaattcttgctc
gacaagatcaaggccacgaaaaataacgcggatttcttcgattccatgcgccgggtatag
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