Nitrosospira sp. NRS527: NNRS527_02485
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Entry
NNRS527_02485 CDS
T08467
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
niz
Nitrosospira sp. NRS527
Brite
KEGG Orthology (KO) [BR:
niz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
niz03016
]
NNRS527_02485
Enzymes [BR:
niz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NNRS527_02485
Transfer RNA biogenesis [BR:
niz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NNRS527_02485
Prokaryotic type
tRNA splicing ligases
NNRS527_02485
SSDB
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Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BCT68878
LinkDB
All DBs
Position
2614250..2615461
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AA seq
403 aa
AA seq
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MKNIYSEEGSRPIKAWTDVEGDALAQARNLARLPFVDRHGIALMPDCHLGKGTTVGTVIA
TDKAIIPAAVGVDIGCGMNAVRLSLKASDLPDSLLSVRRQIERDVPLGAGGSRKKPVALG
KLSLELNEGRGYKRWFGRFAQSRKTDEISLLNKAESQLGTLGSGNHFIELCTDENQDVWV
MLHSGSRGIGNMIGSYFIEKARRRMERLSIHLPDSDLAWLAEGEDDFDDYVEAVNWAQDY
ALENRRIMMETTIAALRRHIPINFTLTREAINCHHNYVEKETHFGRNVWVTRKGAIRARV
DDLGIIPGSMGQRSYIVRGKGEPESYCSCSHGAGRKMSRSQARSIFTVADLVQQTKGVEC
RKDKMVLDEIPSSYKDIDEVMANQADLVEVVHTLKAVMCVKGS
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatatttatagcgaggaaggatccagacctatcaaggcctggaccgatgttgaa
ggcgacgcacttgcccaagccagaaatcttgcgcgactgcctttcgtagatcgacacggt
atcgccctcatgcccgattgtcatcttggcaaaggtacgacggtaggcaccgttatcgca
acggataaagccatcattccagccgcggtaggtgtcgatatcggctgcggcatgaatgcc
gtccgcctttccctcaaagcttcggacctgcccgattcgttgctttctgtccgtcgccag
attgaacgtgatgttcccctgggtgctggcggaagccgcaaaaagccggttgcactgggt
aagctttccttggagcttaatgaaggtcgtggctacaagcgatggttcgggcgtttcgcg
caaagtcgaaagaccgatgagatcagcttgctgaataaggccgaatcacaactcggaacc
ttgggctcaggcaatcacttcatcgaattgtgcacagatgagaatcaggacgtgtgggtg
atgctccactcgggttcgcggggcattggcaacatgattggaagctatttcatcgaaaaa
gcccggcgccggatggaacgcctttccattcacctgccggatagcgatcttgcatggctg
gcagaaggcgaggatgacttcgacgattatgtggaagctgttaactgggcacaggactat
gcgcttgagaaccggcggataatgatggagaccacaatagcggcgttacgccgccacatt
cccattaattttacccttacccgggaagccattaactgtcaccacaattacgtggaaaag
gaaacgcactttgggcgaaatgtatgggtgacccgaaagggagcaatacgtgcgcgggtg
gacgatctgggtattattcccggctcaatgggccagcggagctatatagtgcggggaaag
ggcgaacctgaatcctactgctcctgctcacacggtgcgggccgcaaaatgtcccgaagt
caggcgcgaagtatatttaccgtggccgacctggttcagcagaccaaaggggtcgagtgt
cgcaaggataaaatggtgttggacgagataccctcatcgtataaggacatcgatgaggtg
atggcaaaccaggcagacctggtggaagtagttcatactttaaaagcagtgatgtgcgtc
aaaggaagttga
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