Nitrosospira sp. NRS527: NNRS527_02968
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Entry
NNRS527_02968 CDS
T08467
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
niz
Nitrosospira sp. NRS527
Pathway
niz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
niz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NNRS527_02968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niz03019
]
NNRS527_02968
Enzymes [BR:
niz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NNRS527_02968
Messenger RNA biogenesis [BR:
niz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NNRS527_02968
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Utp25_C
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCT69347
LinkDB
All DBs
Position
complement(3136225..3137766)
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AA seq
513 aa
AA seq
DB search
MDMSFTQLNLSSEILRAIADQGYTEPTPIQAQAIPLILEGKDIMGAAQTGTGKTAGFTLP
MLSRLQPGASTSASPARHPIRSLILVPTRELAVQVYESVKTYGKYLPLRCAVVYGGMDMQ
PQTKDLRAGVEILVATPGRLLDHIQQKTMSLSKVEILILDEADRMLDMGFLPDIKRILAL
LPQQRQSLMFSATFSEEIKKLANTLLRDPELIEVARRNSIAELITHVVHPVSRTRKRELL
AHLIKSADLKQVLVFVRTKHGASRLAEQLERDGITATAIHGDKTQPQRTQALAEFKEGIV
RVLVATDVAARGLDIEDLPHVVNFELPTTPEDYIHRIGRTGRAGTKGDAISLVCEDEAEL
VQGIEKLLKFKLNSTVIAGFEPEAHGHPAESTESEGKHRTFDRNKSVRPEQRNTIKHADR
PDDAHSALHPRNGKDAKRPRDHASPQRRGSTVPEDPLFSQPYIPRTPVTQHADNPEAASS
RNNQPDHSPHRQQGKRLAALFMPRSPSKSEQDH
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggatatgtcgttcactcaactcaatctttcgtccgaaattctacgcgccatagccgat
caaggctacaccgaacctacaccgattcaagcccaggcaattccgctcatactcgaggga
aaagatatcatgggagcggcccagacaggcactggcaaaaccgcaggctttacattgccc
atgctgagccggttgcaacccggggccagcaccagcgcctcgcccgcaagacatccgatt
cgttcgctgatcctggtacccacgcgtgaactggccgtccaggtatatgaaagcgtaaaa
acctatggtaaatatctgcccctgaggtgtgccgtcgtttacgggggtatggatatgcag
ccccagacgaaggatttacgcgccggagtggaaatcctcgttgcgacgcccggccgcctg
ctggatcatatccagcagaagacaatgagcctgtcgaaggtcgagatcctgatactggat
gaagccgaccgcatgctggatatgggtttcctacccgatatcaagcgtattctggcgttg
ttgccgcagcagcgccaaagtctgatgttctcggcaactttctctgaagagatcaagaag
cttgcaaacacgcttttaagagatccggaattgatcgaggtagcaaggcgtaattccatc
gcggaactgatcactcacgtggtgcacccagtgtccagaacgcgcaagcgtgagttgctg
gctcaccttatcaaatcggcggacttgaaacaggttctggtattcgttcgcaccaagcat
ggcgccagccggttggctgagcagttggaacgggatggaatcactgcgacggcaattcac
ggcgacaagactcagcctcaacgcacccaggcgctggcggaattcaaggaaggcatagtt
cgcgtattggtggcgaccgacgttgctgcgcgggggttggacatcgaggatctgccgcat
gtggtcaacttcgaattgcccaccacgcccgaggactatatccatcggattggccgcacc
ggccgcgcgggcacaaaaggagacgcaatttcactggtatgcgaggatgaggccgagttg
gtccaaggtatcgaaaagctcctgaaattcaagctcaattccacagtcatagcgggattc
gaaccagaagcccacggccatcctgcggaatccacagaatctgaaggtaaacatcgcaca
ttcgatcgcaacaaatcagtgcggccagaacagcgaaatactatcaaacacgctgatcgg
cccgatgacgcgcactccgcattgcatcccagaaatggcaaagatgctaagcgccccaga
gaccacgcgagcccgcagcggcggggctccacggtgcccgaggatccattattcagccaa
ccttatatacctcgcacgcctgtgacccagcacgccgataatcctgaagcggcgtcctcg
cggaacaaccaaccagatcattcgccacataggcagcagggtaagcgcttggccgcacta
tttatgccgagatcgccaagcaagtccgagcaagatcactag
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