Nitrospira japonica: NSJP_0867
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Entry
NSJP_0867 CDS
T05001
Symbol
holA
Name
(GenBank) putative DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
nja
Nitrospira japonica
Pathway
nja03030
DNA replication
nja03430
Mismatch repair
nja03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NSJP_0867 (holA)
03430 Mismatch repair
NSJP_0867 (holA)
03440 Homologous recombination
NSJP_0867 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nja03032
]
NSJP_0867 (holA)
03400 DNA repair and recombination proteins [BR:
nja03400
]
NSJP_0867 (holA)
Enzymes [BR:
nja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NSJP_0867 (holA)
DNA replication proteins [BR:
nja03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NSJP_0867 (holA)
DNA repair and recombination proteins [BR:
nja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NSJP_0867 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_delta2
DNA_pol3_gamma3
DUF6459
HTH_29
HTH_28
Motif
Other DBs
NCBI-ProteinID:
SLM47039
UniProt:
A0A1W1I2E4
LinkDB
All DBs
Position
I:complement(803811..804929)
Genome browser
AA seq
372 aa
AA seq
DB search
MPPSLSPAQVPSHLQQTTPASIYAVIGEDDLLRDEAVACLKAAVVGEQGDVFNSNQFYGD
EADGAEIVACASESAVFASRRLVVVKGADKLPAREGDALLPYFESPNDSTTLVFVAPKLD
RRLKFTQALIKSAVAVDCSPPKESQYLSWLKAEAARLGVKLEEEAIELLKESCAESLYAA
RRELEKLASYVPSNRSVTAADVTVMRGTEPGASVFDLTAAIGAGDRGRALAILARNLESG
EAPLKILGALVWQYRRLWKSKDLMRQGGRQGEVARMFRMDPSGVRSFLERFSEQHLTDAF
RRFQQTDHALKGGSAGRPERIMDQLMFELCGRERENAPPTVSGREPVAFAQRSRTKPVSN
VRTVTRGSRPGR
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgccgccatcgctctcaccggcacaagttccgtcgcatcttcagcagacgactcccgct
tcgatttatgcggtgatcggcgaggacgacttgctgagggacgaggccgtggcctgtcta
aaagccgcagtggtcggtgaacaaggcgatgtgttcaacagcaaccagttctatggagat
gaagcggacggagcggagattgtcgcctgcgcatccgaatctgcggtcttcgcttcccgc
cgtctggtcgtcgtgaaaggcgccgacaagcttccggcaagggagggcgacgccttgctt
ccctatttcgagagcccgaacgattccacgaccctggtgttcgtcgcgccgaagctggac
cgcaggctgaaattcacgcaggcgttgataaagagcgccgtcgccgtggattgctctcct
cccaaggaatcacagtacctgtcctggctcaaggccgaagcggcgcggctcggcgtcaag
ctggaggaagaagccatcgagcttctcaaggagtcgtgcgcggaatccctctatgccgcc
cggcgtgaattggaaaagctcgcatcgtatgtgccatccaaccgttcggtgacggcggcg
gatgtgaccgtgatgagggggacggagccgggtgcctccgtattcgatctgaccgcggca
atcggcgcgggagatcgaggccgcgcgttggccatcttggcgaggaacttggaatcggga
gaagctccgctcaagattcttggcgcgctggtctggcagtaccggcgtctctggaaatcc
aaagacctcatgcgacagggcgggcggcagggggaagtggcgcgaatgtttcggatggat
ccgtcaggcgtccgctcgttcctcgaacggttctccgagcagcatcttacggatgcgttt
cggcgatttcagcagacagaccacgcgctcaaaggcgggagcgcaggtcgaccggaacgg
atcatggatcaactgatgttcgaactctgcggtcgggagcgagagaatgccccaccgacc
gtgtcggggcgggaaccggtcgcattcgctcagagaagccggactaaaccggtttcgaac
gtgcgaacggttacgcgcgggtcgcgcccagggcgttga
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