Nitrospira japonica: NSJP_2332
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Entry
NSJP_2332 CDS
T05001
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nja
Nitrospira japonica
Pathway
nja03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NSJP_2332 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nja03021
]
NSJP_2332 (rpoC)
03400 DNA repair and recombination proteins [BR:
nja03400
]
NSJP_2332 (rpoC)
Enzymes [BR:
nja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NSJP_2332 (rpoC)
Transcription machinery [BR:
nja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NSJP_2332 (rpoC)
DNA repair and recombination proteins [BR:
nja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NSJP_2332 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
DUF7351
Motif
Other DBs
NCBI-ProteinID:
SLM48504
UniProt:
A0A1W1I680
LinkDB
All DBs
Position
I:2205699..2209880
Genome browser
AA seq
1393 aa
AA seq
DB search
MEGVYTLFEKPRDAVSFDSMRIRIASPEKIRSWSYGEVKKPETINYRSFKPEKDGLFCAK
IFGPIKDWECNCGKYKRMKHRGIVCDKCGVEVIQSKVRRERMGHIELAAPVAHIWFLKGV
PSRIGTLLDMSLKQLEKILYFESYVCVDAGQTDLTEKELVTEEKLRQLQSEFAPNSYKVG
IGAEAIRDLLRKIDINAKWDEIKAKSKTSTSAALKKKHAKQLKVIEAFRKSGNKPEWMIM
DVIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELKAPGVIIRNEMRML
QEAVDALFDNGRRGRAIRGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRTVIVVGP
ELRLHQCGLPKKMALELFKPFIFHKLEERGAATTIKSAKRLVEKERPEVWDVLDEVIREH
PVLLNRAPTLHRLGIQAFDPVLVEGKAIRLHPLVCAAFNADFDGDQMAVHVPLSVEAQVE
ARVLMMSINNILSPANGKPIAVPSQDMVLGCYWLTKERVGVKGEGKVFGSPEEVRIAFDA
REVEEHARVKVRIEGNLVQTTVGRVILSEVLPAGMPFAYANKLMTKKEVTKLIDSVYRQS
GHRETVMFLDKIKDTGFQYATRAGVSICIDNMHIPSKKEELIAKAQREVNEIERQYAEGL
ITNGERYNKVIDIWAHVTEQVAGEMMKELGAGGDAAKQEAFNPIFMMADSGARGSSQQIR
QLGGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTR
RLVDIAQDVIISEIDCGTTDGIFVSALVEGGEIIQPIEERILGRLAAEDIRDPVTGEIIV
SFNEEITEERTKDVVEAAVDRVKIRSVLTCQSRRGVCRACYGRDLARGRLVEKGEPVGVI
AAQSIGEPGTQLTMRTFHIGGTASKVVEQTVLEAKHAGYMKFMSFDAKKNADLHNAGIAV
RNKDGEWVVMNRNAKIAIVDENGREREKYPVVYGAKIKIKDGDRVALAQKLVEWDPYSLT
ILTEVGGKVAYGDIVEGVTMKEEFDEVTGLSRKVIIEHTGATLRPRVSIKDEGGKTAKVS
GGANMVARYLLPVGAHIFVEKGAMVHPGDVLAKIPRETTKTKDITGGLPRVAELFEARKP
KEQAVISEIDGEVSYGGFVKGQRKVLVDNKMGDTKEYFIPKGKHVNVHEGDWVRAGEPLM
DGSANPHDILDVLGPNELQKYLVDEVQDVYRLQGVSINDKHIEIIVRQMLRKVRIEDPGD
TEFLPGSQVSKLLFEEENDRVLKKDGKPALGKPVLLGITKAALTTDSFISAASFQETTRV
LTEAAINGREDNLLGLKENVIVGRLIPAGSGFEEYRDTFVISPKPEPVAVGTGDAPALPR
EGVAAASGETTGS
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
ttggaaggcgtatacacattattcgaaaaaccgagggacgcggtgtcgttcgattcgatg
cggatccgcatcgcctcgcccgaaaaaatccggtcctggtcgtacggtgaagtgaagaag
cccgagacgatcaattaccggtcgttcaagccggagaaagacggcctgttctgcgcaaag
attttcgggccgatcaaggattgggagtgcaattgcggcaaatacaagcgcatgaagcac
cggggcatcgtatgcgacaagtgcggcgtggaagtgattcagagcaaggtgcggcgcgaa
cgcatggggcacatcgagctagctgcgcccgtggcgcacatctggttcttgaagggcgtg
cccagtcgcatcggcactctgctggacatgagcctgaagcaactggaaaagattctctat
ttcgaaagctacgtctgcgtcgacgccggtcagacagacctgacggaaaaggaactcgtc
acggaagaaaaactccgacagctgcagtcggaattcgcgcccaattcctacaaggttggc
atcggcgccgaagcgattcgcgatttgttgcgcaagatcgacatcaatgccaagtgggac
gagatcaaggccaagtccaagacttccacgtcggcggcgttgaaaaagaaacacgcgaag
caactcaaagtcatcgaggcgttccgcaagtccgggaacaagcccgaatggatgatcatg
gacgtgattcccgtgctgccaccggagttgcgcccgctcgtacccctggacggcggacgg
ttcgccacgtcggatctgaacgatctctatcgccgcgtgatcaaccggaacaaccggctg
aagcggttgatggagttgaaggcgcccggcgtcatcatccgcaatgaaatgcgcatgctg
caggaggccgtggacgcgttgttcgacaacggccgccgcggccgtgcgatccgcggaccc
aacaagcggccgctcaagtcgctgagcgacatgctgaagggcaagcaagggcgtttccgg
cagaacctgctcggcaagcgcgtcgactattcgggccggacggtcatcgtcgtcggtcct
gaactgcggctgcatcagtgcggccttccgaagaagatggccttggagctgttcaagccc
ttcatcttccacaaactggaggaacggggcgccgccacgacgatcaagagcgcaaagcgc
ctggtggaaaaggagcggcctgaggtgtgggacgtgctcgacgaagtgatccgggagcat
ccggtacttttgaaccgagcgccgacgctccaccggttgggcatccaggcgttcgatccg
gtgttggtcgaaggcaaagcgatccggctgcatccgctcgtctgcgccgcgttcaacgcg
gacttcgacggcgaccagatggccgtccacgtgccgttgtccgtcgaggcacaagtggaa
gcgcgcgttctgatgatgtccatcaataacattctctcgccggccaacggcaagccgatc
gccgttccgtcgcaggacatggtgctcgggtgctactggctgacgaaggagcgggtcggt
gtgaagggtgagggcaaggtattcggctcgcctgaagaagtgcgcatcgcgttcgatgcg
cgcgaagtggaggagcacgcgcgggtcaaggttcgcatcgaaggcaatctcgtgcaaacc
acggtcgggcgggtgatcctgtccgaagtactgcctgccggaatgcccttcgcctatgcc
aacaagctgatgacgaagaaagaggtgaccaagctgatcgattcggtctatcggcagtct
ggacaccgcgagaccgtcatgttcctcgacaagatcaaggacaccggatttcagtatgcg
accagggccggcgtctcgatctgtatcgacaacatgcacattcccagcaaaaaggaagag
ttgatcgcaaaagcgcagcgcgaagtcaacgagatcgagcggcagtatgccgaaggcttg
atcacgaacggcgagcggtacaacaaggtcatcgacatttgggcccatgtcaccgagcag
gtggcgggcgaaatgatgaaggagttgggcgcaggcggcgatgcggccaagcaggaggcc
ttcaacccgatcttcatgatggccgactcgggcgctcgaggcagttcgcagcagatccgt
cagctgggcggcatgcgcggattgatggcgaagccgtccggagaaatcatcgaaacgccg
atcacggcgaatttccgcgaaggcctgacggtgctgcagtacttcatctcgacgcacggc
gcgcgcaagggtctggcggatacggcgttgaagaccgcaaactccgggtatctcacgcgc
cgtctcgtggacatcgcgcaggacgtcatcatcagtgaaatcgactgcggtacgaccgac
gggattttcgtgagtgcgctggtcgaaggcggcgaaatcatccagccgatcgaagagcgc
atcctgggacgcctggccgccgaggatatccgcgatcccgtgaccggcgagatcatcgtg
tcgttcaacgaggagattaccgaagagcggacgaaggacgtcgtggaagcggccgtcgac
cgggtaaagatccgatccgttctgacttgccagtcccgtcgcggcgtctgccgtgcctgc
tatgggcgggatctggcgcgcggccgtttggtcgaaaagggagagccggtcggcgtgatc
gcggctcagtccatcggagagcccggaactcagctgacgatgcgcacgtttcacatcggc
ggcaccgcgagcaaagtggtcgagcagacggtgctcgaagcgaagcatgcgggctacatg
aagttcatgagttttgacgccaagaagaacgccgacttgcataacgccggtatcgccgtc
cgtaacaaggacggcgagtgggtcgtgatgaaccggaatgcgaagatcgcgatcgtcgat
gagaacggtcgggaacgtgagaaatatccggttgtctacggcgccaagatcaagatcaag
gacggtgatcgtgtcgccctggcgcaaaagctggtggaatgggatccgtactcgctgacg
atcttgaccgaggtcggcgggaaggtcgcctacggcgatatcgtcgaaggcgtgacgatg
aaggaagaattcgacgaggtgaccggtttgtcgagaaaggtcatcatcgaacacacggga
gcgactcttcgtccccgcgtgtcgatcaaggacgaaggcggaaaaaccgccaaagtgtcc
ggtggggccaatatggttgcccgatacctgctgccagtcggcgcccacatcttcgtggag
aagggtgccatggtgcatccgggcgacgtgctcgcaaagatcccgcgcgagaccacgaag
acgaaggacatcaccggcggtcttcctcgcgtggcggagctcttcgaggcccggaagccg
aaggagcaagccgtcatcagcgaaatcgacggagaggtgtcgtacggcgggtttgtcaaa
ggccagcgcaaggtgttggtcgacaataagatgggcgataccaaagaatacttcatcccg
aaaggcaagcacgtcaacgtgcatgaaggagattgggtgcgcgccggggagccgttgatg
gacgggtcggccaatccgcacgacatccttgacgtgttgggtcccaatgaattgcagaag
tatctggtcgacgaagtgcaggacgtctatcgtctgcagggcgtatcgatcaatgacaag
cacatcgagatcattgttcggcaaatgctgcgcaaggttcgaatcgaagatccgggggac
acggaatttctcccaggcagccaggtcagcaagctgctctttgaagaggaaaacgaccgc
gtgttgaaaaaggacggcaagcccgcactgggcaaaccggttctgctgggcatcaccaag
gcggcgctgacgaccgacagtttcatttccgccgcgtccttccaggagacgacgagagtc
ttgaccgaagcggccatcaacgggcgagaagacaatctgctgggtctgaaggaaaacgtc
atcgttggacgcctgattcctgccggcagcggatttgaggaatatcgcgacacgttcgtg
atcagtcccaagcccgaaccggtggctgttggcacgggcgacgcgcccgcgcttccacgc
gaaggcgtcgccgcggcctctggagagacgacgggatcgtga
DBGET
integrated database retrieval system
