Nitrospira japonica: NSJP_2778
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Entry
NSJP_2778 CDS
T05001
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nja
Nitrospira japonica
Pathway
nja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NSJP_2778 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nja03019
]
NSJP_2778 (deaD)
03009 Ribosome biogenesis [BR:
nja03009
]
NSJP_2778 (deaD)
Enzymes [BR:
nja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NSJP_2778 (deaD)
Messenger RNA biogenesis [BR:
nja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NSJP_2778 (deaD)
Ribosome biogenesis [BR:
nja03009
]
Prokaryotic type
rRNA helicases
NSJP_2778 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
SLM48945
UniProt:
A0A1W1I7I4
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All DBs
Position
I:2651450..2653186
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AA seq
578 aa
AA seq
DB search
MKIDQTHPPAAHTATGFSPGFAALGLEASLLASLETLGYEEPTPIQREAIPPLLAGRDLL
GQAATGTGKTAAFTLPVLQRIAHGGGPRPAALVLVPTRELAIQVGQAVQRYGRELRTTVL
PVYGGQAIGAQLHALRRGVDVVVATPGRMLDHLRRQPQLLANVRVVVLDEADEMLDMGFA
DDLEAIFGHLPETKQTALFSATMPPRIKAIAHRHLRNPVEIAIAKEPVKPGSAPRVQQTA
YVVARPHRNAALARVLDVTGPTSALVFCRTRLEVDEVTSMLNARGYRAEAIHGGMSQVQR
DRVMQAFRAGQTELLVATDVAARGLDIPHVSHVVNVDLPSSAEVYVHRIGRTGRAGREGA
AITILDPREQRLLRSIEQHTKGQVVVLPIPTAAALRAKRMERAKTAVLEVLKAGDLDQFH
TVVEDLAAASDPAKVAAAALRLVFRAQGGERPEQDIPAPVLPNARMRDREGRPGGRGHHE
PQHGAEPRRGPRAGHPVRQPGLSRVYIGAGREVGIRPGDLVGAIANEAKVNAKVIGAIEI
EDRFSIVDVPESIVRDVVEALNRTRIKGRKVSVRLFRE
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgaagattgaccaaacccatcctcccgcagcccatacggccacggggttttcaccgggc
ttcgccgcgctcggcctcgaagcctccctgctagcctccctcgaaaccttggggtacgaa
gagcccacgcccattcagcgcgaggcgattcctccattgctcgcgggacgtgatctcctc
ggacaggctgcgaccggaacgggtaagacggctgcgttcacgctgccggtcttgcaacga
atcgcccacggcggcgggcctcgccctgccgcgctggtgctcgtgccgacacgggaattg
gccattcaggtcggccaggccgtgcagcgttacggtcgcgagctgcgcacgacggtcttg
ccggtgtacggagggcaggccatcggggcacagcttcacgcgctcaggcgcggcgtcgat
gtcgtggtggccactccgggacggatgctcgatcaccttcgccggcagccgcaattattg
gcgaatgtgcgggtcgtggtcctggacgaagcggacgagatgctcgacatgggttttgcc
gacgaccttgaggccatcttcggacatcttcctgagaccaagcagacggcgctattttcg
gcgaccatgcctccacgtatcaaggcgatcgcacaccggcatcttcggaatcccgtcgaa
attgcgatcgccaaagagccggtcaagccggggagcgctccccgcgttcaacagacggcc
tatgtcgtggccaggccgcaccggaatgcggcgcttgcgcgggtgctggatgtcacgggg
ccgacctcagccctggtgttctgccgcaccaggctcgaagtcgacgaagtcacgtcgatg
ttgaacgcacgtggctatcgggcggaggcgattcacggcggaatgagtcaggtccaacgc
gaccgggtgatgcaggcgttccgggctggtcaaacggagctgctggtcgcgaccgatgtc
gctgcgcgcggtttggatatcccgcacgtctctcacgtcgtcaacgtcgatctgccgtcg
tccgcggaagtgtacgtccaccgcattggccggaccggtcgcgccggacgtgaaggcgcg
gccatcacgatcctggatcctcgcgagcaacggctcttgcggagcatcgagcagcatacg
aaaggtcaggtcgtcgtcctgccgattccgaccgccgccgcgctccgcgcgaaacgaatg
gaacgggccaagaccgccgtcctcgaagttctgaaggcgggagatttggaccagttccat
accgtcgtcgaggacctggctgcggcaagcgatccggcgaaagtcgcggccgccgccttg
cgattggtgttcagggcgcagggtggcgagcggccggaacaggacattcccgctccggtg
cttccgaatgcgagaatgcgagatcgggaagggcgtcccggcggtcgagggcatcacgag
ccgcaacacggagccgagcctcgccgaggtccgagagccggtcatccggtccgacagccg
ggtctgtcccgggtatacattggagccggccgtgaggttgggatcagaccgggagacttg
gtcggcgcgatcgccaatgaagcgaaggtgaatgccaaggtcatcggcgcgatcgagatc
gaggaccgcttttcaatcgtggacgtgcccgaatcgatcgtgcgggacgtggtggaggcg
ttgaaccgaacccgaatcaaagggcgcaaggtgtcggttcggttgtttcgggagtga
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