Candidatus Njordibacter sp. Uisw_002: ABXT42_00550
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Entry
ABXT42_00550 CDS
T11338
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
njo Candidatus Njordibacter sp. Uisw_002
Pathway
njo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
njo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABXT42_00550 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
njo03021
]
ABXT42_00550 (rho)
03019 Messenger RNA biogenesis [BR:
njo03019
]
ABXT42_00550 (rho)
Transcription machinery [BR:
njo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ABXT42_00550 (rho)
Messenger RNA biogenesis [BR:
njo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABXT42_00550 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Fungal_virus_P2_C
OB_RNB
AAA_22
NACHT
AAA_25
S1CSD-TOTE-2
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
XOJ99481
LinkDB
All DBs
Position
112177..113436
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKTKTMPELVEIAQGMGLDNVARSRKQECIFSILKRHAKSGEDIFGQGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFSLRTGDSIDGKIRPPKDGERYFALLKVNSIN
YGPPEQAKHKVLFENLTPLFPTERLSMELGNGSSEDLTARIIDLTAPMGKGQRALIVSPP
KAGKTLMLQNIAHSITRNNPDCHLIVLLIDERPEEVTDMKRSVRGEVVASTFDEPPSRHV
QVAEMVVEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF
FGAARNIEEGGSLTIIATALTDTGSKMDEVIFEEFKGTGNSEVHLDRKIAERRVFPAINI
RKSSTRREELLTRDEELQRMWILRKLLDPMEDGQATEFLLDKLKGAKTNEEFFMSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaactgaattaaaaactaaaacaatgcctgaacttgttgaaattgcccaaggt
atgggtctcgataatgtagctaggtctcgtaaacaagaatgtatctttagcattcttaaa
cgtcatgctaaaagtggcgaagatatttttggccaaggtgtgctagaaatattgcaagat
ggctttggcttcttgcgctcagcagacgcttcttatttagcagggccggacgacatttat
gtctcgccaagccaaatacgccgctttagccttcgcacaggcgacagcatagacggtaag
atccgtccacccaaagatggcgaacgctattttgccctgcttaaagtgaacagcattaac
tatgggccaccagaacaagcaaagcataaagtgttgtttgaaaacctaacacctttgttc
cctacggaacgtttaagcatggagcttggtaatggctctagtgaagacttaacggcccgt
atcatcgatttaacagcgccaatgggcaaaggccagcgtgccttgattgtgtccccacct
aaggctggtaaaaccttgatgctgcaaaatattgcgcattccattacgcgtaataatcca
gattgtcatttgatcgtgttgcttattgacgagcgtcctgaagaagtgaccgacatgaag
cgctctgtgcgtggcgaagtagtggctagcacgtttgacgagccaccttcacgtcacgtg
caagtagctgaaatggtcgttgaaaaagccaagcgtttggtagagcacaaaaaagacgtg
gtcatccttttggattcaatcactcgtttggctcgtgcctacaacactgtaatcccttct
tctggcaaggtattaaccggtggtgttgacgcccatgcattagagcgccctaagcgtttc
tttggtgcggcacgtaatattgaagaaggcggtagccttaccattattgctacagcattg
accgatactggctcgaagatggacgaagtgatctttgaagaatttaagggcacaggtaac
tcagaagtgcacttggatcgtaaaattgccgagcgccgtgtattccctgccatcaacatc
cgtaagtcttccactcgtcgtgaagagctattaactcgtgatgaagagctgcagcgcatg
tggattttgcgtaaattgcttgatcctatggaagatggccaagcgactgaatttttgttg
gataagcttaaaggtgctaaaaccaacgaagagttcttcatgtctatgaagcgtaagtaa
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