Candidatus Njordibacter sp. Uisw_002: ABXT42_01795
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Entry
ABXT42_01795 CDS
T11338
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
njo Candidatus Njordibacter sp. Uisw_002
Pathway
njo03030
DNA replication
njo03430
Mismatch repair
njo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
njo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABXT42_01795 (dnaE)
03430 Mismatch repair
ABXT42_01795 (dnaE)
03440 Homologous recombination
ABXT42_01795 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
njo03032
]
ABXT42_01795 (dnaE)
03400 DNA repair and recombination proteins [BR:
njo03400
]
ABXT42_01795 (dnaE)
Enzymes [BR:
njo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABXT42_01795 (dnaE)
DNA replication proteins [BR:
njo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABXT42_01795 (dnaE)
DNA repair and recombination proteins [BR:
njo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABXT42_01795 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
XOJ99719
LinkDB
All DBs
Position
370577..374101
Genome browser
AA seq
1174 aa
AA seq
DB search
MTQVVPFVHLRMHSEFSLIDSMIRIKPLMKTLLAEQMPAIALTDQSNMCAMIKFYKAAQA
SGIKPICGCDVFISNEVSAESAVTRMTLLAMNSKGYLNLTELVSRSFQEGQVDGKAIIQK
QWLAQKNEGLIVLSGAAQGEVGQTLINRGLVDAQDILHSWINIFGDRFYLEVQRTGRQYD
EDCLHLSVELGKANQVPIVATNDVMFISPDDFEAHETRVCINQSMTLDDPRRAKAYSNQQ
YLRSTEEMQQLFADLPSALANSVQIAKRCNLDIELGQCFLPNFPVPDGMTMDEFFGQVSR
DGLDKRLQVILAPSDPDYADKRKVFDDRLDFELQIICQMGFPGYFLIVMDFIRWAKDNEI
PVGPGRGSGAGSLVAYVLEITDLDPLKYDLLFERFLNPERVSMPDFDIDFCMDNRDRVIE
YVSQTYGKDAVSQIITFGTMAAKAVVRDVARVQGKPFGLADKLSKLIPFEVGITLSKAVE
QEEALADFIDNNDEVQEIMEMAYQLEGLTRNVGKHAGGVVIAPTKLTDFSPLYCDVDGSG
LVTQYDKNDVEDAGLVKFDFLGLKTLTVVDWAIRMINDRRAARGEEAINIEAIPLADEPV
YKLLQGAETTGVFQLESRGMKDLIKRQLPSSFEDIIALVALFRPGPLQSGMVDDFINRKH
GRAKLAWPHEDYQLDSLRPILEPTYGIILYQEQVMQIAQVMAGYSLGEADMLRRAMGKKK
PEEMEKQRAGFLAGSVANGIDEGLAGNIFDLVEKFAGYGFNKSHSAAYALVAYQTAWLKH
HYPAEFMAAVLSADMQNIDKIVIFVEECRRMELPINLPDVNASHYKFTVNAENEVVYGLG
AVKGVGEGPVEAIIEARQSGGDFINLFDFCKRVGSKKLNKRVLEALVASGALDNIVPNKE
RSVLYSAIGDAVQSADQSERNADAGMADLFGDIVAPINETGMAFVYDRHLDARPLTLKQR
LKGEKDTLGLYVTGHPIDSYDHELGRFLRCRLDQLFAKKEKQWIAGLVVASRTMKTKRGK
TIAFLTIDDRRARVDVALFGDSYDKYRDMLQNDRLLIIEGEVSEDDYSGGLKVSAQQILT
MPQARSVFSKGLRLSVAPDFAQGKGLQQLLSILTPHQVRGDAPAAKLELQYENSMGRGVI
RCATPWRLEIEDDMLQELSYLLGENAVKMRYRKL
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagttgtaccctttgtgcatttgcgtatgcactccgagttttcgctgatcgat
agtatgatacggatcaagccattgatgaaaactctgcttgcagagcagatgccagcaatc
gctttgaccgatcagtccaatatgtgcgccatgatcaagttttataaagccgcccaagct
tctggtattaaacctatttgtggctgtgatgtttttattagcaacgaggtttctgctgag
tcggcagttacacgtatgactttactagcgatgaattccaaaggttatctcaatctgaca
gagcttgtttcacgctcgtttcaagaggggcaggtagacggtaaagcgataatacaaaaa
caatggttagcacaaaaaaatgaagggctgattgtgttatcaggcgcggctcaaggtgaa
gtaggccaaacattaatcaatcgtggtttggtagatgcgcaagatattttacatagctgg
attaacatttttggtgatcggttttatttggaagtacagcgtacaggaaggcaatacgat
gaggattgtttgcacttgtctgttgagctgggtaaggctaatcaagttccaatagtggca
actaacgacgtcatgtttatatcacctgatgattttgaagcccacgaaacacgagtctgt
attaaccaaagcatgaccttggatgaccctcgaagagctaaagcatactctaatcaacaa
tacctacgaagcactgaagaaatgcagcagctgtttgcagatttaccctctgctttggct
aatagtgtgcaaattgcaaagcgatgtaatttggatattgaattaggacaatgcttttta
cccaactttccagtgccagatggcatgactatggatgagttttttggacaagtgtctcgc
gacggtttggacaagcggttacaggttattttagccccatctgaccctgactatgcggac
aaacgtaaggtatttgatgacagattagactttgagttgcagatcatctgccaaatgggg
tttccaggctattttcttatagtcatggatttcatccgttgggctaaagataatgaaatt
cctgtaggtcccgggcgaggttcaggcgcgggttctttagtggcttatgtgttggaaatt
acggacctagaccctctaaaatatgatttgttattcgagagattcttaaatcctgagcgt
gtgtcgatgcctgattttgacatcgatttttgtatggataacagggatcgtgtcattgaa
tatgtgtctcaaacctatggcaaagatgcagtatctcaaataataacatttggtaccatg
gcagcaaaagctgtggtgcgtgacgtggctcgtgtgcagggcaagccttttggtttggct
gataagttgtctaaactcatcccgtttgaggtaggcatcactttaagcaaagctgttgag
caagaagaagctctggcagacttcattgacaacaatgatgaagtgcaagaaataatggag
atggcttatcagttagagggtctgacgcgaaacgtgggtaagcacgctggtggagtagtc
atagctcccaccaagttaactgatttttcgccgttatattgtgatgtggacggatctggt
ttagtcacccaatatgataagaatgacgttgaagatgcaggcttagttaagttcgatttt
ttgggacttaaaaccctcacagtggttgattgggctatacgcatgatcaatgaccgccgt
gccgctcgtggtgaagaagcgattaacattgaagccataccccttgcagatgagcccgtt
tacaaattgcttcaaggtgccgaaacaaccggtgtgttccagctagaatcgcgaggtatg
aaagaccttattaagcgccaactgcccagtagctttgaagacattattgctcttgtggcg
ttgtttcgtcctggcccactacagtctggaatggttgatgacttcattaaccgtaaacac
ggtcgtgctaaattagcatggccccatgaagattatcagctggattccctaaggcccata
ctggagcctacctacggcattattttgtatcaagagcaagtgatgcagattgctcaggtg
atggctggttatagtcttggtgaggcagacatgctgcgccgggcaatgggcaagaaaaaa
ccagaagaaatggaaaagcagcgagcaggctttttggcaggcagtgttgctaatggcatt
gacgaaggcttagcaggtaatatttttgatctagtagaaaaatttgcgggctatggcttc
aacaagtcacactctgcggcttatgcattggtggcctaccagacggcttggcttaaacac
cactaccctgcagaatttatggctgctgtgttgtcagcagatatgcaaaatattgataaa
atcgttatttttgttgaagagtgtcggcgcatggaactgccgatcaatctacctgatgtg
aatgctagccattataaatttacagttaatgccgaaaacgaagtggtgtatggtctgggt
gccgtgaaaggcgttggtgaaggtcctgtcgaggccatcatagaggctagacaaagcggt
ggtgattttataaatctgtttgatttttgtaagcgggtgggcagtaagaagctcaataag
cgcgtgttagaggctttagttgctagtggcgccttggataatatagtgcctaataaagag
cgatctgtcctatacagcgccatcggtgacgctgttcaatctgcggatcaaagtgagcgt
aatgcggatgcggggatggctgatttattcggtgatatagtggccccaataaatgaaaca
ggcatggcatttgtctatgatcgccacttagatgctcggcctcttacattaaaacaacgc
ttaaaaggtgaaaaagataccttagggctctatgtcactggacaccctattgatagttac
gatcatgaacttggacgttttttacgatgtcgcttagatcagctttttgctaaaaaagaa
aaacaatggattgcaggcctagtggtggcaagtcggaccatgaaaaccaagcgtggaaaa
acgattgcttttttaacaattgatgatcgaagggctagggtagatgtagccctgtttggc
gatagctatgacaagtaccgtgacatgttacaaaatgatcgcttgctgattattgaagga
gaggtgtctgaagatgattattcgggcggacttaaagtcagtgcccagcaaatcctcact
atgcctcaagcccgaagtgtattctctaaaggattacgactatctgtggcgcctgacttt
gcgcaaggcaagggattgcagcagctgcttagtattctcacacctcatcaggtgcgtggt
gatgcacccgctgcaaagcttgagctacagtatgaaaatagcatgggtagaggcgttata
cgttgcgccacgccgtggcgtttagaaatagaagatgacatgcttcaagaactttcatac
ctgttaggtgaaaatgcagttaaaatgcgctatcgcaaattataa
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