Candidatus Njordibacter sp. Uisw_002: ABXT42_03905
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Entry
ABXT42_03905 CDS
T11338
Name
(GenBank) exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
njo Candidatus Njordibacter sp. Uisw_002
Pathway
njo03030
DNA replication
njo03430
Mismatch repair
njo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
njo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABXT42_03905
03430 Mismatch repair
ABXT42_03905
03440 Homologous recombination
ABXT42_03905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
njo03032
]
ABXT42_03905
03400 DNA repair and recombination proteins [BR:
njo03400
]
ABXT42_03905
Enzymes [BR:
njo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABXT42_03905
DNA replication proteins [BR:
njo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABXT42_03905
DNA repair and recombination proteins [BR:
njo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABXT42_03905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
RNase_H_2
DNA_pol_A_exo1
DUF7508
Motif
Other DBs
NCBI-ProteinID:
XOK00107
LinkDB
All DBs
Position
816223..817821
Genome browser
AA seq
532 aa
AA seq
DB search
MQLNFLDQPMPKQLSSGFPDSMVILDCETTGGQAIHHRIIEIGLVVIEQGKLVETWQSFI
DPNVQIPPFIQKLTGISPGMLVGAPAFSDIAQTLLKKLEGRTLVAHNARFDYSFLKNEFD
RVGIRYNAKPLCSVKFSRNLYPQFRRHGLSQIIQRFELAIENRHRALDDAQMVYQFFQKS
SALFSDDEIAATCQALLKRPALPTLLKAKDVEKLPAAAGVYYFYDEKGALLYVGKSVHIR
NRVMSHFSSDHKNPKDLQMSTKIAHVDFERTPSDFGAQIRESSQIKELAPLYNRRLRKVK
KLYQIRSRTDDAGYLRLSVEIVETADTQVDEQFGLFRSARQASKKLEALADQYFLCHKLM
NLEGSQTSNHPCFRAQLKKCFGACHGKETPELYNERTQAALKNYQVKTWPYPGPILLEER
DPNNLDNVMFHVVDRWRYVAKLALLEDIYDYGYQLAQAQQQNASAAKGSALLLGTQPSSP
SESQLQISAAQLEQNHQFDLDTYFILVRFLVNQKKTQVNGLKVWPLVAIATP
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcaattttttagaccaacccatgcctaagcagctctcatctgggtttccagat
agcatggtgatattagattgcgaaaccacaggaggccaagccattcaccaccgtattata
gaaataggcctggtggttatagaacaaggcaagcttgtggaaacgtggcaaagtttcata
gaccctaacgtgcaaataccgccctttatccaaaagctaaccggcatcagccctggcatg
ttggtaggcgccccagcatttagcgacatagcccaaactttgttaaagaagctagaaggg
cgcacactagtggcccacaatgctcgctttgattatagctttttaaaaaacgaatttgac
cgagtaggcattcgctacaatgccaagccgctatgttcggtaaaatttagccgtaattta
tacccacaatttagacgccatggcctatcacaaattattcagcgctttgaattagccata
gaaaaccggcaccgcgccttagacgatgcccagatggtgtatcagtttttccaaaagtcc
tcagccttgttttcagatgacgaaatagcagccacatgccaagccctgctaaagcgccca
gcgctgcctactcttttaaaggccaaagacgtagaaaaattacccgcagcagcaggggtg
tattatttttacgatgaaaagggcgccttgctgtatgtaggcaaaagcgtacacattcgt
aaccgggtaatgagccactttagctccgaccacaaaaaccctaaagacctacaaatgagc
acaaaaattgcccatgtagattttgaacgcacccccagcgactttggtgctcaaatacgt
gaaagcagccaaataaaagagttagcgcctttgtataatcgtaggctgcgcaaagtgaaa
aagttgtaccaaataagaagccgcaccgatgatgcaggctatttgcggcttagtgtagag
atcgtagaaacagccgacacccaagtagatgaacagtttgggttgtttcgctcggcccgc
caagcctctaaaaagctagaagcactggcagaccaatactttttatgccacaagctaatg
aacctagagggcagccaaacatctaaccacccctgctttagagcccagctaaaaaaatgc
tttggcgcatgccatggcaaagaaaccccagaactttacaacgagcgcacccaagcagcc
ctgaaaaactaccaagtaaaaacatggccctacccaggtcctatattgttagaagagcga
gacccaaataacttggataacgtgatgtttcatgtggtggatagatggcgctatgttgct
aagcttgccctgttagaagacatctacgattatggttatcaactagcccaagcccaacag
caaaacgcttcagccgctaaaggaagcgcattgctattaggtacgcaaccaagcagccca
agtgaaagccagctacaaataagcgcagcccagctagagcagaatcaccagtttgaccta
gatacctactttatattagtgcgctttttagtgaaccaaaagaaaacccaagtcaacggc
ctaaaggtttggccgttagtggccattgccaccccttga
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