Candidatus Njordibacter sp. Uisw_002: ABXT42_04590
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Entry
ABXT42_04590 CDS
T11338
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
njo Candidatus Njordibacter sp. Uisw_002
Pathway
njo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
njo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABXT42_04590 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
njo03019
]
ABXT42_04590 (rhlB)
Enzymes [BR:
njo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABXT42_04590 (rhlB)
Messenger RNA biogenesis [BR:
njo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABXT42_04590 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DUF6830
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XOK00236
LinkDB
All DBs
Position
964713..965942
Genome browser
AA seq
409 aa
AA seq
DB search
MKSNDSNITDQAWSLDEFVVAQEEGKTRFHDLDLPDQVMQGIAALGYEYCSPIQALTLPE
SLAGKDITGKAQTGSGKTAAFLLSIITDFLDFPISGPRRLGTPRALIVAPTRELVMQIAS
DAEDLTRFCDVNVQQLVGGMDFEGQQKQLKKQHVDIMVATPGRLLDFCRRGHVNLREVEV
VVLDEADRMLSMGFIPDVRAIIRQTPKKEDRQTLLFSATFSEQILRLAEQWTFEPVHVEI
ESDELASASVDQRFYSVARADKYKVLLNCLKTMGVERAIVFANRRHITRDLAEKLQKDGI
KSALLSGEVAQAKRVKTLERFRSGETPILVATDVAGRGIHVDGVSHVFNYDLPEELEDYV
HRIGRTGRAGASGISISFASEDDAFIMPDLEVMLGKRLDCEPTPSELLV
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatcaaatgattcaaatatcactgaccaagcctggtcattagacgaattcgtcgtt
gcacaagaagaaggcaaaactaggtttcatgatttggatttacctgatcaggtgatgcaa
gggattgctgctttgggatatgagtattgcagccctatacaagctctaacgctgccagaa
tctttggccggaaaagacatcactggtaaagcacaaactggctctggtaaaacagcggca
tttttgctgagcattatcactgactttttagatttccctatcagcggtccgcgtcgatta
ggcaccccaagagccctaattgtagcgcctacgcgtgagctagttatgcaaattgccagt
gatgccgaagatcttacccgcttttgtgacgttaacgtacagcagcttgtgggcggtatg
gattttgaaggccagcaaaagcaattaaaaaagcagcatgtagatattatggtggccacc
cctggcagactattagatttttgtcgcagagggcacgtcaatctacgagaggttgaagta
gtagtgttggatgaagctgaccgtatgctaagtatgggatttattcccgatgtacgcgct
atcattcgtcaaacacctaaaaaagaagaccgtcaaactttattgtttagcgctactttt
agtgagcagatattgcgtttggcagagcagtggacatttgagccagtgcatgtggaaata
gagtctgatgagcttgcttctgccagcgtagatcaacgattttattcagtagcccgagca
gataaatataaagtattgctcaattgtttaaaaacaatgggtgtagagcgagccattgtg
tttgctaaccgacgtcatatcactcgagatttagcagaaaagttacaaaaagatggcatt
aaaagtgcacttttgtcaggcgaagtggcgcaagcaaagcgggtgaaaaccttggaacgc
ttccgcagtggcgaaacgcctatattagttgctactgatgttgctggtcgaggcatccat
gtagatggcgtaagtcatgtgtttaactatgatttaccagaagagcttgaagattacgtg
catcgtatcgggcgcacagggcgagcaggcgcttcaggtatatccatcagctttgcttct
gaagatgatgcgtttattatgcctgatctagaggtgatgctgggtaagcgtttagactgc
gaacccacgcctagcgaactactagtgtaa
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