Candidatus Njordibacter sp. Uisw_002: ABXT42_05300
Help
Entry
ABXT42_05300 CDS
T11338
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
njo Candidatus Njordibacter sp. Uisw_002
Pathway
njo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
njo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABXT42_05300 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
njo03019
]
ABXT42_05300 (rne)
03009 Ribosome biogenesis [BR:
njo03009
]
ABXT42_05300 (rne)
Enzymes [BR:
njo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABXT42_05300 (rne)
Messenger RNA biogenesis [BR:
njo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABXT42_05300 (rne)
Ribosome biogenesis [BR:
njo03009
]
Prokaryotic type
rRNA processing factors
ABXT42_05300 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XOK00375
LinkDB
All DBs
Position
complement(1112594..1115464)
Genome browser
AA seq
956 aa
AA seq
DB search
MKRMLINATHSEELRVALVDGQRMYDLDIESGAREQKKANIYRGRITRVEPSLEAAFVDY
GSERHGFLPLKEISREYFKDPSQSGRSSIRELVKEGQEIVVQVDKEERGNKGAALTTFIS
LAGRYLVLMPNNPRAGGISRRIEGEERSQLREVMNQLNVPAESGVIVRTAGIGRSAEDIQ
WDLDYLQQLWESITAASDKQAAPFLIYQESNVIIRAMRDYLRPDIGEVLIDEPKVYQDVL
TFVQQVMPSYESKIKFYDQEIPLFNRFQIESQIETAFQREVTLPSGGAIVIDPTEALVSI
DINSARATKGSDIEETALNTNLEAAEEIARQLRLRDMGGLVVIDFIDMGPMRNQRAVENK
LRDSLKLDRARVQVGRISRFGLMEMSRQRLRPSLGETSGIVCPRCSGQGSIRDVASLALS
IIRLINEEASKDRSAEIRVVLPVNMATYLLNEKRAEILEVEKTVGVRVVIIPNPQMDTPH
FEVSRLRDDHEAAQAGETSYEIDLVQHHFDAKEFDAKTPLAMEKPAVESIQPAKKAPKAE
AVAPIKAKTAPTKPVNPLGLGARIAKALGRLINGKPKVKVVAKAPVKAPSSRDDSRSDSR
NDSRNGSRNTQNRNQNDDRRRGRNGNRRNESRDEKRNEATTDNRNSSRNEAPATLRNEER
KSERNTDEKRNNNRRQDTRNKPREPKVEAVEATTQAPPVAEEAYESNSNRTRDQKRRRDR
SGKRSNQKQNVEVAVDENVKADATTDVTLNTEVTAPTEVIVESVVEAVAEVTVDEVVETT
SDTKAAPKKEAAEKKPRQRKPRERKPKEVKVSEVAVEVTTETSIEATTPNPKTSVESVES
VVVTPSESANQTPVEVKAEVEVEAKSEEKVVEVAAKTTKAVEVEVEVEATVEKASEAVLE
KTTEKKADVVTETTPVSAPAAVSEVAPRPSGQRAHNDPREKRRREKAAAEEAAKEA
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaataaatgcaacccactctgaagagttgcgcgttgcactggtcgat
ggccagcgtatgtacgacctagatattgaatctggcgctcgtgaacaaaaaaaggccaac
atttaccgtggccgtatcacccgtgtagagcctagcttagaagctgcgtttgttgactat
ggctccgaacgacacggttttttacccctaaaagaaatttcccgcgagtattttaaagac
ccttcacaaagtggtcgctccagtattcgggaattagtaaaagaaggtcaagaaattgtt
gttcaggttgataaagaagaacgtggtaacaaaggcgcagccttaactacattcattagc
cttgctggccgctacttagtattaatgcctaataacccaagagctggaggcatttcgcgt
cgcattgaaggcgaggaaagatctcagctacgtgaggttatgaatcaattgaatgtacct
gctgagtctggcgttattgtacgcacagcaggtattggccgcagtgcagaagatatacag
tgggatctagactacttgcaacagttatgggaatccattactgcagcgtctgataaacaa
gctgctccattcttaatttatcaagaaagtaacgtcatcatccgggctatgcgtgactac
ttacgtccagacattggcgaggtattaattgatgagcctaaggtataccaggacgtatta
acttttgttcagcaagtcatgccaagttatgagagcaagatcaagttttatgatcaagaa
atccccttgttcaatcgcttccaaattgaatctcaaattgagactgctttccagcgagaa
gtgacactaccttctggcggtgccattgttatcgatcctacagaagcactcgtatctatt
gatattaactcagctagagcaactaaaggcagtgacatagaagaaactgccttaaacacc
aacctagaagcagcagaagaaattgctcgccaattacgcttgcgtgacatgggtggcttg
gttgttatcgactttatagacatgggcccaatgcgcaatcaacgtgctgttgagaacaaa
ctacgtgatagtttaaaacttgaccgtgctcgcgttcaagtcggacgtatttctcgcttt
ggcttaatggaaatgtctcgtcaacgtttacgcccttccctgggtgaaacctctggcatc
gtatgcccacgctgtagtggacaaggcagtattcgtgatgttgcctcactagccttatct
atcattcgtctaatcaacgaagaagccagtaaagatcgctctgcagaaattcgcgtggtg
ttacctgtaaatatggcaacttatttacttaacgaaaaacgtgctgaaattttagaagta
gaaaaaacagtgggtgtgcgtgtagtaatcattccaaacccacaaatggacacacctcat
tttgaagtgagccgtttgcgcgatgaccatgaagcagcgcaggcaggcgaaactagctac
gaaatcgatttagttcagcatcattttgatgctaaagaatttgatgctaaaacaccttta
gccatggaaaagcctgcagttgaaagcattcaacccgctaaaaaagctccaaaagcagaa
gctgttgcgccaattaaagctaaaacagctccaacaaagcctgtcaatccactaggctta
ggtgctcgtatcgctaaagctttaggccgactaattaacggcaaacctaaagttaaagtt
gtagcaaaagcacctgtaaaagcgccttcttctcgcgacgattcacgcagtgactcgcgt
aatgattcacgcaatggctctcgaaatacccaaaaccgtaaccaaaacgatgatcgtcgt
cgcggtcgcaatggtaatcgacgcaatgagtctcgtgatgaaaaacgtaacgaagccacg
acagataatcgcaacagttcacgtaatgaagcgcctgcgacacttcgtaatgaagaacgt
aagagtgagcgaaatacagatgaaaagcgcaataacaaccgccgccaagacacgcgtaat
aaacctcgtgaacccaaggttgaagctgtagaagctacaacacaagctccgccagtagca
gaggaagcgtatgaatctaactccaaccgtacgcgtgaccagaagcgtcgtcgcgatcgt
agtggtaagcgcagcaatcaaaagcaaaacgtagaagtcgctgtagatgaaaacgtaaag
gcagatgcaactactgatgtgactttaaacacagaagttaccgcacctactgaagtaatc
gttgaatctgttgttgaagccgtagctgaagtgacagttgatgaagtagttgaaacaact
tcagatacaaaagccgcacccaaaaaagaagctgctgaaaagaagcctcgccagcgcaaa
ccccgtgaacgcaagcccaaagaagttaaggttagcgaagttgcagtggaagtgacaact
gaaacttcgattgaagctacaacaccaaatcctaaaacatcagttgaatcagttgaatca
gttgtggtaactccaagcgaatcagctaaccaaacccctgttgaagtaaaggctgaagta
gaggttgaagctaaatctgaggaaaaggtagtggaagttgcagccaaaaccactaaagca
gttgaagttgaagttgaagttgaagcaacagtagaaaaggcctctgaagctgttcttgaa
aaaaccactgagaaaaaagctgacgttgtcacagaaacaacgcctgtcagcgctccagca
gcagtgagtgaagtagctccacgcccatctggtcagcgtgcccataacgaccctcgtgaa
aaacgtcgtcgtgaaaaggcagctgctgaagaagcggcaaaagaagcttaa
DBGET
integrated database retrieval system
