Candidatus Njordibacter sp. Uisw_002: ABXT42_06630
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Entry
ABXT42_06630 CDS
T11338
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
njo Candidatus Njordibacter sp. Uisw_002
Pathway
njo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
njo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABXT42_06630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
njo03019
]
ABXT42_06630
Enzymes [BR:
njo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABXT42_06630
Messenger RNA biogenesis [BR:
njo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABXT42_06630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
XOJ98410
LinkDB
All DBs
Position
1386067..1387380
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AA seq
437 aa
AA seq
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MSFSNLGLCDPILQAIDDLGYKTPTPIQGQAIPVILSGKDLIATAQTGTGKTAAFVLPIL
ENINKDRKLRGKRIRTLILTPTRELAVQVADNVAAYSKHLGLTSMAVYGGVDTQPQKQRL
IEGIDVLVATPGRLIDLAHQRALYFDELEILVLDEADRMVDMGFGAEINKIIERLPEARQ
NLMFSATLSDDVLALADSFSEGALDSRAVELSISPKTTTAPNIDQWLITVDKDRKSALLS
HLITDQAWDQALIFIEKKHGAAKLVDQLGKRNIVADAIHGDKSQASREKILADFKSGKLK
YLVATGVAARGIDIGELSRVVNYDMPFKPEEYIHRIGRTGRAGAAGEAISFVAWGDFKNL
CAIESRLNHIIKRKEIDGFPVRKLVPVSILNYVRKSPGPSPRADRPDRATSKHARPASTG
SKPESGPNARTNKHIWG
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcaaacctagggttatgcgaccccattttacaagctattgatgacttaggt
tataaaacccctactcccattcaaggccaagctatacctgtcatcttgtcgggtaaagac
cttattgccactgcccaaacaggcacaggcaaaaccgctgcctttgtattgcccattcta
gaaaatataaacaaagaccgcaaactccgtggcaaacgtatacgcacacttatccttacc
cctacaagggagctggccgtgcaagtggctgacaatgtagcggcctatagtaagcacctt
ggccttacatctatggcggtgtatggcggtgtagacacgcagccacaaaagcagcgcctt
atagaaggcattgatgtgctggtggcaacccctggcaggctgatagatctggcccaccag
cgcgcattatattttgatgagctagaaatactagtgctagatgaagccgatagaatggtg
gatatgggctttggtgctgagattaataaaattattgagcgcttgcccgaagcacgtcaa
aacctgatgttttctgccaccttaagcgacgacgtgctagcccttgctgatagcttttct
gaaggcgcattggacagccgcgctgtagagctttctatctcacctaaaaccaccacagca
cccaacatagaccagtggctgattaccgtggacaaagacagaaaatctgccctgcttagc
catttgattactgatcaggcatgggatcaagcacttatttttatcgagaaaaaacacggc
gcggccaaactagtagaccagctaggcaagcgcaacatagtagctgatgcgatacatggt
gataaaagccaagcctctcgtgagaagattttggccgattttaaatctggcaagcttaaa
tacctagtagccacaggtgtggcagcgcgtggcatagacataggcgagctaagccgagtg
gtgaactatgacatgccatttaagcctgaagaatacattcaccgtattggccgcaccggc
cgcgcgggtgcagcgggtgaagccatttcttttgtagcttggggagattttaaaaaccta
tgcgctattgaaagccgtttaaaccacattataaaacgcaaagagatagatggcttccct
gtgcgcaagctagtgcctgtgtctattttaaactatgtgcgcaaaagcccaggccctagc
cctagagctgataggcctgatagagcaacatcaaagcacgcacgccctgcatccactggt
agtaagcctgaaagtggccctaatgccagaaccaacaaacacatctggggataa
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