Neptunomonas japonica: NEJAP_0766
Help
Entry
NEJAP_0766 CDS
T07060
Symbol
rpoD
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
njp
Neptunomonas japonica
Pathway
njp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
njp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NEJAP_0766 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
njp03021
]
NEJAP_0766 (rpoD)
Transcription machinery [BR:
njp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NEJAP_0766 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
BBB28723
UniProt:
A0A7R6PSK9
LinkDB
All DBs
Position
complement(861795..863633)
Genome browser
AA seq
612 aa
AA seq
DB search
MTGISQQQSRLKELIARGKEQGYLTYTEVNDHLPEDIADPDQVEDIIRMINDMGIPVSEV
APDAETLLMKEGDSSVDTDEEAVAALVESDAGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGIREVMSALAFFPGSVEIILEAYNSVLQEEGRLSDIFSGYIDPDSVIAAQAAEAA
AIQEELGEDAEAEEDENGDDSDDEEEGDRGPDPEEARVRFTLIKENLLAVYGAVEQHGRD
SKEFTIAMDELAVSFAPIKLSPRFYETLVVRVRDFIARTRQQERTIMRICVQRCKMPRIF
FIKEFPGNETDTAWLEKMIASGADYSRAMKINLPDLQRAQRKLIQLEDEAQISLSDIKDV
NRRLSIGEAHARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPE
ELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSSLGDFIEDGNHTSPVDSATGEGLR
ESTREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSDHLRSFLDE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgactggcatctctcagcagcaatctcgtctcaaagaactgatagctcgcggtaaagaa
caaggctatctcacatatactgaggtgaatgatcacctgcctgaggatatcgccgatccc
gatcaggtggaagatataatccgcatgatcaacgacatgggtattcctgtgtctgaagtt
gcccctgacgccgaaacgctattgatgaaagaaggtgattcttcagtagatactgacgaa
gaagcggttgctgccttagttgaatctgacgctggacgcacaactgatcctgtccgcatg
tatatgcgcgaaatgggtaccgttgaacttctgacgcgcgaaggcgaaatcgtcatcgct
aagcgtatagaagaaggcattcgagaagtcatgtctgctttagccttttttccaggttct
gtagagatcatccttgaagcttacaattcagtacttcaagaagaaggccgtctcagtgac
atattcagcggttacatcgaccctgatagcgttattgcagcgcaagctgctgaagctgcg
gctattcaagaagagctcggtgaagacgctgaggcagaagaagacgaaaacggcgatgac
agcgatgacgaagaagaaggtgatcgcggcccagaccctgaagaagcacgtgttcgtttc
actctcattaaagaaaatttgctcgccgtctacggggccgttgaacaacatggccgggat
agcaaagaatttactattgcgatggatgaacttgctgtttcttttgcgccgataaaacta
tctccacgcttctatgaaacactcgttgtacgcgtaagagatttcatcgcacgtacgcga
caacaagaacgcaccattatgcgtatctgtgtccaacgctgtaaaatgccaagaattttc
tttatcaaagagttcccaggtaacgaaacagatacagcttggcttgaaaagatgattgca
tcaggtgcagactattcaagagcaatgaagatcaatctacccgaccttcagcgcgctcaa
cgcaagctgatccagctcgaagatgaagcacagatctctttgtcagatataaaagatgtt
aaccgccgcctatctatcggcgaagctcacgctcgacgtgccaaaaaagagatggtggaa
gccaacttacgtctggttatatctattgcaaaaaaatacaccaaccgcggtttacagttc
ctagatcttattcaggaaggtaacatcggtttgatgaaagccgttgataaattcgaatac
cgtcgtggttataagttctctacttatgctacttggtggattcgacaggctatcacccgc
tctatcgctgaccaagcacgtacgattcgtattccagttcatatgatcgaaacgatcaat
aaactgaaccgcatctctcgtcaaatgctacaggaaatggggcgtgaaccattacctgaa
gaattagctgaacgcatggagatgccagaagataaaatcagaaaagttcttaaaattgct
aaagaacctatctcgatggaaacacctatcggtgatgatgaagactctagccttggagac
tttatcgaagatggcaaccatacatcacctgttgattcagcaactggcgaaggtctacga
gaatcaacacgcgaagtactggcaggcctaactgctcgcgaagctaaagtgcttagaatg
cgctttggtatcgacatgaacactgatcatacacttgaagaagtgggtaaacagtttgat
gttactcgcgaacgtattcgccagattgaagcaaaagcgttgagaaaactacgtcaccct
agccgttctgatcacttgcgcagcttcttagacgaatag
DBGET
integrated database retrieval system
