Neptunomonas japonica: NEJAP_1112
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Entry
NEJAP_1112 CDS
T07060
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
njp
Neptunomonas japonica
Pathway
njp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
njp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NEJAP_1112 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
njp03400
]
NEJAP_1112 (recB)
Enzymes [BR:
njp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NEJAP_1112 (recB)
DNA repair and recombination proteins [BR:
njp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NEJAP_1112 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
AAA_11
ResIII
Sap1_N
Motif
Other DBs
NCBI-ProteinID:
BBB29067
UniProt:
A0A7R6PMC7
LinkDB
All DBs
Position
1250026..1253559
Genome browser
AA seq
1177 aa
AA seq
DB search
MTIKLLDPVTLPIKGQCLIEASAGTGKTYTLAALYLRLLLGLGSGAKNNEEEGSDEGAQV
PLGVEQILVVTFTEAATQELRDRIRQRIREARKAFISGHTSDPLLSRLLEQTSQHQDKAR
LLELAAAEMDQAAIFTIHGFCQRMLKQHAFESGALFNQELTTDDAPLIRQALLDYWRDTF
YRAPDELAAQMLQQFKTPDLLLPAIRSFLAIHELVQQPDYSQFDLKEGWLAEKQALSTFK
QDWLESVSDITTLIDASGVNKRRYSKRNLPNWLEAVSAYAQGETPHAPWDKLNYFRDSVI
AEDCPKGSPPSHPIFQQVDDLFDLRVPVKAVVVSQAIGEVKQRLQAEKARHQLLAFDDLL
TQLAYALRKEDGERLADAIRKQYPIAMIDEFQDTDPLQYAIFNQIYPAAPSALLMIGDPK
QSIYAFRGADIFTYMQARKQVTAHYTLDTNWRSSTTMVAAVNALFSYVESPFIYDRDIPF
YAAKASAHADKSPFTCNGKVQSSLNFWLAEETLSVADYLTQYALGCAQHIESVLTSGLYQ
IGRRAVQPADIAVLVRDRKEAKEVQQALRNCGVDSVFLSSRESVFSTVEAREFFYILQAI
TEPTDERMMRTALATGLFHLDMSELDDLCQSELEWEALVEEFQQYREHWLRLGVLPMLHN
LLTTRGLSYRVLVSNDGERRLTDLLHLGELLQKASQEVEGLMGVIRWFAEHLASPNQNSD
EQQLHLESDRSRVTIITIHKSKGLEYELVYLPFICRYRESSSSLFHDDEGRAVLSLAPDD
EIEAQVEKERLAEDLRLLYVAITRAVHACYLGVSDIRYRNSKKGKTVNSALGYLLMGQEP
DIIAAVDLFSASYPALNVQPVPTSAPDQNTQDMFAEPKLELQVLTTREFSGDIQRDWRVT
SYSALSRFHTQEPVTEVILDLEVLEEQDLVEDDLTGVFNIFTFHRGAVAGTFLHTLFEEI
DFANVTAQQLDEVLEKHLLLSGFEPEWQPVLSEFVLKTLQVPLLQAGCCLKDIALHDRLV
EMEFVLPFAGINAASLNQLLRQYDPLAMRAGELQFDQLQGMLKGYVDLTMRYAGRYYIVD
YKSNHLGYSAADYNQTAMEQAMIGHRYDFQYVLYTLALHRLLRSRLVDYNYETDVGGVYY
LFIRGMNLSDAEQGVFYTKPDFALIDALDKLFEEGCV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgacaattaaacttcttgatccggtcacgcttccgataaagggacagtgcttaattgaa
gccagtgcaggcacgggtaaaacctacacattggcggccttgtatctacgtttgctgtta
gggcttggttctggggcgaagaataacgaggaagagggtagtgacgaaggtgcacaggtg
cctttaggtgtcgagcagattctggtggtgacctttacagaagccgccacccaagagttg
cgagatagaattaggcagcgtattcgcgaagcacgtaaagcttttataagtggccatacg
agcgaccctctgttatcccggctgttggaacaaacatcgcaacaccaagataaggctcgg
ttgttggagctagctgccgctgaaatggatcaagcggctatttttactattcatggcttt
tgccaacgaatgctaaaacaacatgcttttgagagcggcgctctctttaatcaagaacta
acgactgatgatgccccacttattcgccaagcgcttcttgattattggcgggataccttt
taccgggcgcctgatgagctggcagcacagatgctacagcagtttaaaactccggatcta
ttattaccggctattcgtagctttttagccattcatgagcttgtacagcagcctgattat
agccaatttgatcttaaagaaggttggttggctgaaaaacaggctttatctacatttaaa
caggactggctagagtcagtctcagatattacgactttaattgatgcttctggtgttaat
aagcgccgttatagtaagcgcaatttgcctaattggctggaagctgtttctgcgtatgca
caaggggaaacgccacatgcaccttgggataaactgaactattttcgtgattcagtcatt
gctgaggattgccctaaaggctcaccccctagccatcctatctttcagcaagtagatgat
ttatttgatttacgtgtgcctgtaaaagctgtcgttgtttcacaagccattggtgaggtg
aagcagcgtttacaggccgaaaaagcgcgccatcagttattggcatttgatgaccttctg
acgcaattagcttatgcattgcgtaaagaggacggagagcgtttagccgatgctattcgc
aaacagtatccaatcgctatgattgatgagtttcaggatactgacccgttacagtatgcg
atttttaatcaaatttatccggcagcaccttctgctttgctgatgattggtgatcctaag
caatccatttatgcatttcgtggcgctgatattttcacctacatgcaagcccgtaaacag
gttactgcgcactatacattggataccaattggcgttcgtctaccactatggttgcggca
gttaatgctttattttcatatgtagagtccccctttatctatgatcgagatattccgttt
tatgcggccaaagcatcagctcatgctgataaaagcccctttacgtgtaatgggaaggtt
caatcttcactgaatttttggctggctgaggagacgctaagtgttgctgattacctgact
caatatgctttgggttgtgctcagcatatagagtctgttttaacttctggcctttatcag
ataggtcgtcgtgctgttcaacctgcggatattgcggtgttagttcgtgaccgcaaagaa
gcgaaagaggtccagcaagcgttacgtaattgtggtgttgactctgtgtttttgtcgagc
cgtgaaagtgtatttagtactgttgaggctcgagaattcttttatattttacaggctatt
actgagcccacagacgagcgcatgatgcgaaccgcactggcaacagggttgtttcatctg
gatatgtctgaattagatgatttatgccaaagcgaattggagtgggaagcgctggtggaa
gaatttcagcagtatcgcgagcattggttacgtctaggtgttttgccaatgttgcataac
ttgctgacaaccagaggtttatcatatcgcgtactagtatctaatgacggggagcgtcgc
ttaacggatctgttgcacttaggggagttgcttcagaaagcgagccaagaagtggaaggc
ttgatgggtgttattcgctggtttgccgagcatttagcgagccctaatcaaaattctgat
gagcagcagttgcacttagaaagtgatcgttctcgtgtgacgattatcactatccataaa
tctaaaggcctagaatacgaattagtatatttgccgtttatttgtcggtaccgagaaagt
agctcttcactgtttcatgatgatgaaggacgagctgtattgagtttagcacctgatgat
gagatagaagcacaggttgaaaaagagcgtttagctgaagatttgcgcttgctttatgtg
gctataacgcgtgcagtacatgcgtgttatttgggtgtgagtgatattcgttaccgtaat
agtaagaaaggcaaaacagtgaacagtgcgttggggtatctgttaatggggcaggagcct
gatattattgcggctgttgatcttttttctgccagttatcctgcgcttaatgtacagcct
gtaccaacttctgctccagatcaaaatacgcaggatatgtttgcagaaccaaaacttgag
ttacaggtattaactactagagagttctccggggatattcagcgagattggcgtgtgact
agctattcggcactgagccggtttcatacacaagagcctgttactgaagtgattctggat
cttgaagtattggaagagcaagaccttgtggaagatgatttaacgggtgtcttcaatatt
tttacatttcatcgtggtgcagtagccggtacttttttacatacattatttgaagagatt
gattttgcgaacgttacggcgcagcaacttgatgaggtattagagaagcatttgttgctg
agtggttttgagccagaatggcaacccgttttatctgagtttgtattaaaaaccttgcaa
gttccactgcttcaggcaggttgttgtctgaaagatattgcgttacatgaccgtttagtc
gagatggaatttgtattgccctttgctgggataaatgcggcttcattgaatcaattgttg
cgccagtatgaccctttggcaatgcgtgccggagagctacagtttgatcagttgcagggc
atgttgaaaggctatgtcgatttgactatgcgctacgctggccgctattacattgttgat
tataagtctaaccatctggggtatagcgcagctgattataatcaaacggcaatggagcag
gcgatgattgggcatcgttatgattttcagtatgttctttatacattggcgttgcaccgt
ttgttgagaagccgcttagtagattacaactacgaaactgacgtcggtggagtgtactat
ctgtttattcgcggaatgaacttatctgatgctgaacaaggtgtgttttatactaagcca
gattttgcattgattgatgccttggacaaattgtttgaagagggctgtgtatga
DBGET
integrated database retrieval system
