Neptunomonas japonica: NEJAP_1978
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Entry
NEJAP_1978 CDS
T07060
Symbol
sbcC
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
njp
Neptunomonas japonica
Brite
KEGG Orthology (KO) [BR:
njp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
njp03400
]
NEJAP_1978 (sbcC)
DNA repair and recombination proteins [BR:
njp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NEJAP_1978 (sbcC)
Archaeal homologous recombinant proteins
NEJAP_1978 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_ATPase
NB-ARC
AAA_21
T2SSE
cobW
ABC_tran_CTD
AAA_5
AAA_16
ABC_tran
Golgin_A5
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
BBB29928
UniProt:
A0A7R6P9V5
LinkDB
All DBs
Position
complement(2186075..2189149)
Genome browser
AA seq
1024 aa
AA seq
DB search
MHPLTLQMCAFGPFAAEENIDFSRLGDKPLFLINGPTGSGKTTLLDAICFALYGKTTGDE
REGVQMRSDLAQPSLLTEVTFTFELTGKCYRIRRIPEQARPKARGDGFTQQSGEAQLWLL
ADDGSPEKLIVSNKVTEATREVEQLLGMNADQFRQVMVLPQGKFRQLLTADSKDREHIFS
QLFQTQIYKRLEDELKNRSAEVRREVDSLNKQKIALLGQAGLESLETLTEKLQHASDDTQ
KLKQVYDHQLEERVKALREQDQAVELISRFTQLDNLMAEQQVLAQQKDAIDQQSIQLQRH
SEAQHIVPDFERFESSTAIHVQHTERLKTETEKLKLFEQSLQAISIEHAQLPALRQQLDA
HKAQLQVLLGFQSRVQKLQSLKDNHAVAVNASSKTEAALALSKQLHAANQKSIDETEQSI
AQLRLSVQESDGLSLTLQSYSQQLEKKKKIDQLQRQNNTLETSLLTSGQKGAALKAAADE
KEKAANTIERDWHLAQAAILAMTLDDGASCPVCGSMDHPSPAHSDVPPPTQAMVEQVRKQ
YQEASDLLNTERENYRSIKTEISRLSQEISDIDKDLHQALGDASHSSLQEMQSHFSALKK
RLDNLQNQQGILRKSEQALNELKKSQLPLSSSMDETQSAWNAASQLMAQELKAYQIAEQE
LPEAYRSLGVLEAAITQQQGTMNSCEQQLNRLQTRYDTAKEQHDSAAAALGVLQENVGQS
QQTLDAAKTQWQASLLGSAFEGVKEFKESLLDAAIKDSLVQRIDGYKKALQHNLGALQSQ
QQALGESARPDLQPYLDKIASAEEALYAAEQQWRLVHDQLTLLQNTQQRIATLNKEGSAL
EAQYAVVGTLSDVANGQTGNKVSLQRFVLSVLLDDVLIEASHRLALMSKGRYRLLRKEER
AKGNKASGLDLEVEDAYSGRVRAVATLSGGESFMAALALALGLSDVVQAYAGGIRLDTLF
IDEGFGSLDPESLDLAIRTLTDLQQSGRMIGIISHVAELKEQIPARIDIKASELGSKIVW
RDAG
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgcatccattaacgttacagatgtgtgcttttggccccttcgcggcagaagaaaatatt
gatttttcgcgcttaggcgataagccgctttttttgatcaatggcccaacaggatcagga
aaaaccaccttactcgatgcaatctgctttgctttgtatggaaaaactacaggtgatgag
cgcgaaggtgtgcagatgcgctcagatctcgcgcagccaagcctgctaacggaagtaaca
tttacctttgagttaaccggtaaatgttatcgaatccgtcgcattccggaacaggcacgc
ccaaaagcgagaggagatggctttactcagcagtctggcgaagcccagctttggttattg
gcagatgatggctcaccagaaaagttgattgtcagcaataaagtaacggaagctacccgc
gaagttgagcagttactcggcatgaatgccgatcagtttcgccaggtgatggtattgcca
caaggtaagtttcgccagttattaacggcggattcaaaagatagagagcatatttttagt
cagttgtttcagacgcaaatttacaaacgtctggaagatgaattaaaaaaccgctcagca
gaagtgcgacgtgaagttgattcgctcaataagcaaaaaattgcgctgttggggcaagcc
ggattagagagtcttgaaacactcactgaaaagcttcagcatgcttcagatgatacacaa
aaactaaaacaggtttatgatcaccagcttgaagaacgggtaaaagcgctacgtgaacaa
gatcaagcagtcgagttaatttcgcgttttacacagttagataatttgatggctgagcag
caagtgttggcacagcagaaagatgcgattgatcaacagtctattcaattgcagcgtcat
agcgaggcacaacatattgtgcctgattttgagcgttttgaatcttcaacagcaatacat
gtacagcataccgaacgcttaaaaacagaaacagaaaagctcaagctgtttgagcagtct
ttgcaggcaatatccattgagcatgcacagttacctgcgttgaggcagcagttggatgct
cataaagcacagctacaggttttattgggttttcaatctcgggttcagaagctacaaagc
ttaaaagataaccatgctgttgcggtaaatgcttcgtcaaaaacagaggcggcactggcg
ctttcgaagcagctacatgctgctaatcaaaagagtattgacgaaacagagcaatccatt
gcgcaattaaggctgtctgtacaagaatctgatgggctttcgctgacgctgcaaagttac
tcgcagcagttagagaaaaagaagaaaattgatcaactacaacgccaaaataatacgctt
gaaacaagccttcttacttcggggcaaaaaggcgcagcattaaaagcagcagccgatgag
aaggaaaaagcggcgaacactatcgagcgagattggcatttagcacaagcggctattctg
gcgatgacattggatgatggagcgtcttgtcctgtttgcggtagcatggaccatccttca
ccagcacactcagacgttccaccacctactcaagctatggtagagcaggtaagaaagcag
tatcaggaagcgagtgatttactcaatacagagcgagaaaattatcgctcaatcaaaaca
gaaatatcccgcttgtctcaagagatttctgatatcgataaagacctacatcaagcgcta
ggtgacgcatcgcactcatcgttacaagagatgcagtcgcacttttctgcgcttaaaaag
cgattggacaatttacaaaatcagcaaggtatattgagaaaatccgagcaagcattgaat
gagcttaaaaaatcgcagctgccgttatcaagctcaatggacgagacgcagagcgcttgg
aacgctgccagccagcttatggcgcaagagctaaaagcctaccaaatagcagaacaagaa
ctcccagaagcataccgctcactgggtgtgctagaggctgccatcacgcagcaacaaggt
accatgaatagctgtgagcagcagttgaaccgcttacaaacgcgttatgacacagcaaaa
gagcaacatgattctgcggctgctgcgttaggcgttcttcaagagaatgtagggcaaagc
cagcaaacgcttgatgcagccaaaactcaatggcaagcaagcttattgggcagtgcattt
gaaggtgtaaaagagttcaaggagtcacttcttgatgctgcaataaaagacagtcttgtg
cagcgtattgatggatataaaaaagcgctgcaacacaacttaggtgcactgcaaagccag
cagcaggcattgggggagtccgcccgtcctgatttacagccgtatttagataaaattgct
tctgcagaggaggcactgtatgcagctgagcagcagtggcgtttggtgcacgaccagcta
acgcttctgcaaaatacacagcagcgcatagcgacattaaataaagaaggttctgcactt
gaagcgcagtatgcggtagtcggcaccttgagtgatgtggctaacggacagaccggcaac
aaggtaagtttgcagcgctttgtgttaagcgtgctgctggatgatgtactgattgaagcg
agccaccgtttggcactcatgagcaaggggcgttatcggctgctccgtaaagaggagcgt
gctaaaggtaataaggcatcggggttggatctggaggtcgaggatgcttacagtgggaga
gtgcgtgcagtcgcaacgctttctggtggcgagagctttatggccgcattagcattggca
ctgggcttatctgatgtagtgcaggcttatgcaggtggtatccgtttagacacactcttt
attgatgaaggctttggtagtcttgatcctgagtcattggatttggccattcgtacactg
actgacttacaacaaagtggccggatgatcggtatcatttcccacgtagcagagcttaaa
gaacaaatacctgcgcgtattgatattaaggcatcagagttaggcagcaaaattgtttgg
cgtgatgctgggtag
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