Neptunomonas japonica: NEJAP_2395
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Entry
NEJAP_2395 CDS
T07060
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
njp
Neptunomonas japonica
Pathway
njp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
njp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NEJAP_2395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
njp03019
]
NEJAP_2395
03400 DNA repair and recombination proteins [BR:
njp03400
]
NEJAP_2395
Enzymes [BR:
njp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NEJAP_2395
Messenger RNA biogenesis [BR:
njp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NEJAP_2395
DNA repair and recombination proteins [BR:
njp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NEJAP_2395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
HTH_40
ResIII
SKI
Motif
Other DBs
NCBI-ProteinID:
BBB30341
UniProt:
A0A7R6PLC6
LinkDB
All DBs
Position
complement(2649405..2651525)
Genome browser
AA seq
706 aa
AA seq
DB search
MTNKTLHVLKEIFGYDQFRAPQDEVIQSLLDNRDTLVIMPTGGGKSLCYQLPALLRSGTA
LVVSPLIALMYDQVTALSQLGVRAACLNSSLDYVIQTEVEQALLSGQLDLLYIAPERLTQ
PKTLALLQQCEIALFAIDEAHCVSQWGHDFRPEYLKLASLADTFPDVPRIALTATADPRT
QQEIVDRLGLHNARIFIQGFDRPNIRYRIGQKNRAREQLLSFLKQEHPSDAGIVYCLSRK
SVEETAAWLTERGFNALPYHAGLSTDLKNHNQHRFLTEESIIIVATIAFGMGIDKPNVRF
VAHLDLPKSIEAYYQETGRAGRDGMPADAWMVYGLQDVIFLRQMLEGSQAAEQFKQIERQ
KLEAMMGFCEITTCRRQVLLGYFGENDHAPCGNCDTCLEPVPQWDGTEAARKALSSVYRT
GQRYGVNHVIDVLLGNLTDKVKSEHHEKVSTWGIGVGLNRNQWRSVFRQLVARGYLNVDP
DGYGVLHLSDRCRSLLKGNETLLLREDKRERSSGYQKNRGPQQQLDAADHKLWELLKKLR
KRLADEQDVPPYVIFHDATLMEMVMYRPATNAQLHKISGVGERKLELYGEEFLEAICQEP
SVEQDKGGQTQESIALFKAGMTIAQVAKMQKLSEKVIFIHLSAGIKKGELSVEEVVELPE
AELQHIQQVILDCQERFGQALKPVHEALAGVYEIGVLSCIRQGLER
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgacgaataaaaccctccatgtgttaaaagaaatatttggttatgaccagttccgagca
cctcaagacgaggtgattcagagcttgttggataaccgagatacgttagtgattatgcca
acaggtggggggaagtcgctctgctatcaattgccagccttgttgcgctctggtactgcc
ttggttgtatcaccactcattgctttgatgtatgaccaagttacggcgttatcgcaattg
ggtgttcgagcggcttgccttaactcatcgctggattatgtgattcaaacagaggttgaa
caggcgctattaagtggtcagttggatctgttgtatattgcgccagagcggttgacgcag
ccaaaaacactcgctctgttgcagcagtgtgagattgccctttttgctattgatgaagcc
cattgtgtttcgcagtggggtcatgactttaggcctgaatatttaaagctggcatcattg
gctgatacgtttccagatgtgccacgtatagcattaactgccacggctgacccgcgaaca
cagcaagagattgttgatcggctagggttacataacgcgcgtatctttattcaaggtttt
gatcgtcctaacattcgttatcgtataggtcagaaaaaccgtgcgcgtgagcaattactc
tcttttctgaagcaagagcaccccagtgatgcaggtattgtttactgtttgtcacgtaaa
agtgttgaagaaacggcggcatggctgacagagcgaggctttaatgcgttgccttatcat
gcagggctttcaactgatttgaaaaatcataatcagcataggtttcttacggaagagtcg
atcatcatcgttgccactattgcattcggtatggggattgataagcctaatgtgaggttt
gtagcacatttggatttacctaaaagtatcgaggcttattaccaagaaacaggacgggca
gggcgtgatggtatgcctgctgatgcctggatggtttatggtctgcaagatgtgatcttt
ttgaggcaaatgttagaaggctcgcaagcggcggagcagttcaagcaaattgaacgacag
aagcttgaagcaatgatggggttttgtgaaattactacttgtaggcggcaggtgttgttg
ggttattttggtgagaatgatcatgcgccatgtggtaattgtgatacctgcttagagcct
gttccgcaatgggatggtactgaggcggcgcgtaaagcgttgtcatctgtataccggaca
gggcagcgctatggtgttaatcatgtcattgatgttctcttgggcaatttaaccgataaa
gtaaaatctgaacaccatgaaaaggtatctacatgggggattggtgtcggccttaatcga
aatcagtggcgctctgtctttcgtcaactagtcgcgcgaggttatcttaatgtagaccct
gatggctatggagtccttcatctgagtgatcggtgtcgatctttacttaaaggcaatgag
acgttgctgcttcgagaagataagcgagagcgcagtagtggttaccagaaaaatagaggg
cctcagcagcagctagacgctgcggatcataagctttgggagttgttaaagaagttgcgt
aaacgcttggcggatgagcaagatgtgcctccgtatgtaatttttcatgatgcaaccttg
atggagatggtgatgtatcgcccggcgactaatgcgcaactgcataaaattagtggcgta
ggtgagcgtaaattagagctgtacggtgaagagtttttagaagctatttgtcaggagcca
tctgttgagcaagataagggcggtcagacacaggagtcgatcgcgctttttaaagcaggt
atgactattgctcaagttgctaaaatgcaaaagctttcagagaaagttatttttattcac
ttatctgctggcattaaaaagggtgagctatcagttgaagaggtggttgagctgccagag
gctgagttgcagcatattcagcaagtgattttggattgtcaggagcgttttgggcaggcg
ttaaaaccggttcatgaagcattagcgggtgtctacgaaattggtgtgctgagctgtatc
cgtcaggggttagagcgttaa
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