Neptunomonas japonica: NEJAP_3421
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Entry
NEJAP_3421 CDS
T07060
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
njp
Neptunomonas japonica
Pathway
njp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
njp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NEJAP_3421 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
njp03021
]
NEJAP_3421 (rpoC)
03400 DNA repair and recombination proteins [BR:
njp03400
]
NEJAP_3421 (rpoC)
Enzymes [BR:
njp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NEJAP_3421 (rpoC)
Transcription machinery [BR:
njp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NEJAP_3421 (rpoC)
DNA repair and recombination proteins [BR:
njp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NEJAP_3421 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BBB31359
UniProt:
A0A7R6PF19
LinkDB
All DBs
Position
complement(3752375..3756595)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLNLLKSQSQADEFDSIKISLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLMLDITLRDIERILYFESFVVVEPGMTTLERGQLMNDEQYFEALEEFGDEFDARM
GAEAVQMLMASIDLEEEIQMLREEIPQTNSETKIKKLSKRLKLCESFYKSGNKPEWMVLS
ILPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFIFSKLELRGYATTIKAAKKMVEREEPLVWDILDEVIREHP
ILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYWMTRSRINAKGEGMAFADIEEIERAYGAK
QLDLQARIKVRISEVIRDIEGNVTEITEMKETTAGRAMLFSIVPDGLPYELVNQAMKKKA
ISRLLNEAYRRCGLKDTVIFADQLMYMGFRQATVSGSSIGVNDFVIPDEKPTIVGEADAE
VKEIERQFADGLVTQGEKYNKVIDIWSRANDLLAKRMMENLKIEKVIDREGDEVDQESFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITETDCGTENGLVIQPMIEGGDVVVALGHRIL
GRVVARDVLDPAGVDVLIPAGTLIDEAWVHRLENDEAFSSIDEIVVRSAITCDTRFGICA
ACYGRDLGRGHGVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDSVEVKKGG
EIRLHNLKHVETPAGHLVAVSRSGELGVTDEHGRERERYKLPYGAVIKVQDGAEVNPGDI
VANWDPHTHPIITEVAGTVIYVGMEDGITVKQTTDDLTGLSTTEVLDGKDRPAAGKDIRP
MIKLVDEKGVDICHPGTDQLVQYLLPAKAIVNMASGSKVSVGEALARIPQEGSVNKDITG
GLPRVADLFEARKPKESSILAEISGVISFGKETKGKKRLVITPNDAEPFELMIQKWRNLN
VFEGEYVEKGEVISDGPTNPHDILRILGVEALAEFVVNEIQDVYRLQGVGINDKHIEVIC
RQMLRKVEIVTSGDSTFIPGEQVEYAAVVSENAELVEADKIPAKFERVLLGVTKASLATE
SFISAASFQETTRVLTEGAVKGKQDFLRGLKENVVVGRLIPAGTGLAYHSERKRKKAIAE
GTETVSAEEVQEALAAALNASLSNSD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatctgctgaatctactgaagtcacaaagccaggctgatgaatttgactcgatc
aaaatctcgcttgcatcaccggaaatgatccgctcgtggtcattcggtgaagttaaaaaa
cctgaaacgattaactatcgtactttcaagcctgagcgtgatggcttgttctgtgcgaaa
atctttggcccagtcaaggattatgagtgcttgtgcggtaagtataagcgcatgaaacac
cgcggtgttatttgtgagaagtgtggcgttgaagtcacgctaaccaaagtgcgtcgtgac
cgcatggggcatattgaattagcgagccctgttgcacatatttggttcttgaaatcattg
ccgtcacgtatcggtttgatgcttgatattacgctgcgtgacatcgaacgaattctatat
tttgaatcgtttgttgttgttgagcctggtatgactacgcttgagcgtggccagctgatg
aacgatgagcagtactttgaagcacttgaagagttcggtgacgaattcgatgctcgtatg
ggtgctgaagcagttcagatgttgatggcttcaattgatttggaagaagagattcaaatg
ctgcgtgaagaaattccgcaaacaaactctgaaaccaaaattaagaagctttctaagcgt
cttaagctgtgcgaatcattctataaatctggtaacaaaccagagtggatggtgctgtca
atcttgccagtattgccaccagatctgcgtccattagtacctttggatggtggtcgtttt
gctacttctgacctaaatgatctgtatcgtcgtgttattaaccgtaataaccgtttgaaa
cgtctattagatctgaacgcacctgacattattgtgcgcaacgagaaacgtatgctgcag
gaatctgtagatgcgctattagataacggtcgtcgtggtcgcgctattaccggttctaac
aaacgcccactaaaatctttggctgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctattgggtaaacgtgtagattactcgggtcgttcggtaatcgttgtaggtccgtac
ctgcgtttgcatcagtgtggtcttcctaagaagatggcgcttgagctattcaagccattc
atcttttctaagcttgaattgcgtggctatgcgacaacgataaaagccgctaagaagatg
gttgagcgtgaagagccattagtatgggatatcttggatgaggtaatccgtgagcatcct
attcttcttaaccgtgcgccaacacttcaccgtttgggtattcaagcgtttgagcctgtg
ttgatcgaaggtaaagcgattcagttacacccattggtatgtgctgcgtacaacgctgac
tttgatggtgaccagatggcggtacacgtaccgttgactattgaagcgcagcttgaagcg
cgtgctttgatgatgtctaccaacaacatcttgtcaccagcaaacggcgagccaatcatc
gttccttcacaggacgttgtattgggtctgtattggatgacacgttcgcgcatcaacgct
aaaggcgaaggtatggcctttgctgatatcgaagagatcgaacgtgcttacggtgctaaa
cagctagacttgcaggcgcggattaaagtacgcatcagtgaagtgattcgtgatatcgaa
ggtaatgttactgaaatcactgaaatgaaagagacaacggcgggtcgtgccatgctgttc
tctatcgttcctgatggtcttccgtatgagcttgttaaccaggcgatgaagaaaaaagcg
atttcacgcttgttgaatgaagcgtatcgtcgttgcggtctaaaagatacggtgattttc
gctgaccagctaatgtatatgggcttccgtcaagcaaccgtttcaggctcatcaattggt
gttaacgatttcgttattcctgatgaaaaaccaacaatcgttggtgaagctgatgctgaa
gtaaaagagatcgagcgtcagtttgctgatggtttggtaacgcaaggcgagaaatataac
aaggttattgatatctggtcgcgtgctaacgatttgttggctaagcgtatgatggaaaac
ctaaaaattgaaaaagtaattgatcgtgaaggcgatgaagtcgatcaagagtctttcaac
tctgtttatatgatggctgactcaggtgcccgtggtagtgcggcacagattcgacagcta
gcgggtatgcgtggtctgatggccaagccggatggttcgatcatcgaaacgccgatcgtt
gctaacttccgtgaaggcttgaacgtacttcagtacttcatctctactcatggtgctcgt
aaaggtttggcagatacggctctgaaaacggctaactctggttacctgacgcgtcgtttg
gttgatgttgcgcaggatctggttattactgagacagattgcggcactgaaaatggtctt
gtaatccagccaatgatcgaaggcggcgatgttgttgtagcgttagggcatcgtatccta
ggtcgtgtggttgcacgtgatgtacttgatccagcgggtgtggatgtacttattcctgca
ggaacattgattgatgaggcgtgggttcatcgtttagaaaatgatgaagcattctcatct
atcgacgaaatcgtggttcgttcggcaattacttgtgatacgcgtttcggtatttgtgct
gcgtgttacggtcgtgatctaggtcgtgggcatggtgtaaatgcgggtgaggctgtcggt
gttatcgctgcacagtcgattggtgagccgggtactcagcttactatgcgtacgttccat
atcggtggggcggcttctagggctgctgcagtggatagtgttgaagttaagaaaggcggt
gagattcgccttcataaccttaagcatgtagaaacacctgcaggtcacttggttgctgta
tcgcgttctggtgagttgggtgtaactgatgagcatggtcgtgagcgtgagcgttataag
cttccttacggtgctgtcatcaaggttcaagatggcgctgaggttaaccctggcgatatc
gttgcaaactgggatccgcatacgcatccaattattaccgaagttgctggtacagtaatt
tacgttggtatggaagacggtattacggttaagcaaacgactgatgatctgacaggtcta
tctactactgaagtgctggatggtaaagatcgcccggcagccggtaaagacattcgtcca
atgattaaattggtagatgaaaaaggcgttgatatttgtcatcctggtactgatcagctg
gtgcagtacttattgcctgctaaagccatcgttaacatggctagcggcagtaaagtgtcg
gtaggtgaggcgttagcacgtattccgcaggaaggttctgtaaacaaagatattaccggt
ggtctgccacgtgtagctgacttgtttgaagcgcgtaagccgaaagaatcctcaatattg
gctgagatttcaggtgttatctcgtttggtaaagagaccaaaggcaagaagcgcctggtt
atcacaccaaatgacgctgaaccgtttgagttaatgattcagaaatggcgtaacctcaac
gtatttgaaggtgaatatgttgaaaagggtgaggttatttctgatggtccaactaatccg
catgatatcttgcgtatcttgggtgttgaggcgttagctgagtttgttgttaatgaaatc
caagacgtttaccgtcttcagggtgtaggcattaacgacaagcatatcgaagttatttgt
cgtcagatgttacgtaaagttgaaatcgttacttctggtgattctacctttatccctggt
gagcaggttgagtatgctgctgtcgtatctgaaaatgctgagcttgtagaagcagataaa
attcctgctaagttcgaacgtgttttgttaggtgtgactaaagcgtctctggcaacagag
tcctttatctcggctgcatccttccaggaaacaactcgcgtactgaccgaaggggcagtg
aagggcaagcaagacttcttgcgcggattgaaagaaaacgttgtggttggtcgtcttatt
cctgcgggaacgggtctggcttatcacagtgagcgcaaacgcaaaaaagcgattgcggaa
ggaactgagacagtcagtgcagaagaagtgcaagaagcactagcggctgcattgaatgcc
tcgttgtcaaattctgattaa
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