Candidatus Nitrospira kreftii: Nkreftii_000241
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Entry
Nkreftii_000241 CDS
T08052
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nkf
Candidatus Nitrospira kreftii
Brite
KEGG Orthology (KO) [BR:
nkf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nkf03016
]
Nkreftii_000241
Enzymes [BR:
nkf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Nkreftii_000241
Transfer RNA biogenesis [BR:
nkf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Nkreftii_000241
Prokaryotic type
tRNA splicing ligases
Nkreftii_000241
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
RtcB
DDE_Tnp_1_2
Motif
Other DBs
NCBI-ProteinID:
QPD02467
UniProt:
A0A7S8FB13
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All DBs
Position
224443..225873
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AA seq
476 aa
AA seq
DB search
MDLKLLKRRGRDEWHISPRGKMLVPGVIYATEDLIHDMDEKVYEQVTNVATLPGIVQASY
AMPDAHWGYGFPIGGVAAFDPDLGGVVSAGGVGFDISCGVRLLRTGLAGEDIQPVNELLA
EALFHRIPAGVGSTGTVHLDRQEMDAMLAGGAKWAVGKGYGTHEDLEFIEEHGCMAGAKP
EHVSDHAKKRQRDEMGTLGSGNHYLEVQRVVMVFDEEAASAFGVREGDIVVSIHCGSRGL
GHQIGTEFLKSMVISAARHHIELPDRELACAPINSELGEEYLGAMRAGINCALANRQIVT
HLVREVFAELLPQATLSLLYDVSHNTCKVEEHDIDGTPTRLFVHRKGATRAFGPGHPDLP
PPLRAVGQPVLIGGTMGTASYVLVGTKESMSLAYGSACHGAGRSMSRHQALRQWHGREVV
KDLAGRGIVIRSPSMRGVAEEAPGAYKDVSQVVDAADDTKLARKVARLEPLICVKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggatctcaaattattgaaacgacgcgggcgagatgaatggcacatttctcctcgcggc
aagatgttggtaccgggggtcatctatgccaccgaagatttgattcacgacatggacgag
aaagtgtacgagcaagtgaccaacgtggcgacgttgcctgggatcgttcaggcctcctat
gcgatgcccgatgcccattggggctatgggtttccgatcggcggggtcgcggcattcgat
cctgatctcggaggggtagtgtcagccggtggggtgggtttcgacatttcctgcggcgtt
cgcctgctccgcacgggtcttgcgggcgaggacattcagccggtgaacgagctgctggcc
gaggccttgtttcatcgcattcctgctggcgtgggaagcacagggacggtgcacttggat
cggcaggagatggacgccatgctcgccggaggggccaaatgggctgtggggaagggctac
gggacgcatgaggatttggaattcatcgaggagcatggctgcatggccggcgccaaaccc
gagcatgtctcggatcacgccaagaagcgccaacgagatgaaatgggaacgctcggctca
gggaaccactatctcgaagtgcaacgcgtcgtgatggtgtttgatgaagaggcggcgtcg
gcctttggagtgcgagaaggcgacatcgtggtgagtattcactgcggctcgcgtggactc
ggtcatcagatcggcaccgaatttctgaagagcatggttatcagcgcggcgcgccaccat
attgaactgcccgatcgtgagttggcctgcgccccgattaattccgaactgggagaagaa
tatctcggcgcaatgcgggcgggaatcaattgcgcgctcgccaatcgtcaaatcgtcacg
catctcgtcagggaagtctttgccgagctcctgccgcaggcgacactctcactcctctac
gacgtgtcccataatacctgtaaggtcgaggaacacgacatcgacggaacgccgactcgt
ctgttcgtccatcgcaagggcgcgacgcgggcgttcggtcccggacatcccgatcttcct
ccgcccttgcgggccgtggggcagccggtcctgatcggaggcacaatgggcacggcctcg
tatgtgcttgtgggcacgaaggagagcatgtcgctggcctatgggtccgcctgtcatgga
gccggtcggagtatgagccgccaccaagcccttcgccagtggcatggccgcgaggtggta
aaggacttggccgggcgcgggattgtgatccgcagcccatccatgcggggcgtcgccgaa
gaagcgccgggtgcctataaggatgtcagccaggtggtggacgcggcggatgacaccaag
ctggcacggaaggtggccaggctggaaccactcatttgtgtgaagggatag
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