Candidatus Nitrospira kreftii: Nkreftii_000675
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Entry
Nkreftii_000675 CDS
T08052
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nkf
Candidatus Nitrospira kreftii
Pathway
nkf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nkf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nkreftii_000675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nkf03019
]
Nkreftii_000675
03400 DNA repair and recombination proteins [BR:
nkf03400
]
Nkreftii_000675
Enzymes [BR:
nkf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Nkreftii_000675
Messenger RNA biogenesis [BR:
nkf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Nkreftii_000675
DNA repair and recombination proteins [BR:
nkf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Nkreftii_000675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
TniB
Motif
Other DBs
NCBI-ProteinID:
QPD02901
UniProt:
A0A7S8FC05
LinkDB
All DBs
Position
627682..629544
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AA seq
620 aa
AA seq
DB search
MDSLTRQLKERFGFATFRPGQEDVIHAVLAGRDAMAVMPTGQGKSLCYQLPATLLPGLTL
VISPLIALMQDQVSAMKQRKIAAAAFHSGLTGLEKNRVMQDLHHRRVQLLYLAPERMQHD
GFLQLLRSLWVSLLVVDEAHCISQWGHDFRPDFLKIGRLRQELTNPPCLALTATATARVQ
TDLCQRLSLRDPFRLVAGFRRANLALSVHLSQSRQDKLSTLGRLVRETQKGTILVYCATR
RAVEEVAAWLGQAYPSVGYYHAGLSDEERRIVHEEFRRGTVRILAATNAFGMGIDKADVR
LVVHFDIPGSLEAYYQEVGRAGRDGRLAACALLFHERDVATQEYFIEQASKDPEGTDRAE
RMKTLLQEMLGYVSTSTCRQLAILEYFSDDAERALGPCGLCDRCVTPVRQATRAASQETT
VSARDVLETVSWCMGRFGLNRVVDILRGSRSKALLACGAEECPTYGICRTQSKPSVIAGV
KVLIDSGYLRVEGSEYPTLDVTSKGREVLQGLCSVAMGQAADYLSSASVMKPRHSSTVLA
GVPAAMPPDRQLVERLRQLRSQLAEEEGVAPFLIFHDKTLKAIAGYKPGTTAALLEIPGI
GEMKAERYGRRVLAVVNDDQ
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
gtggattctctgactcgacagctcaaagaacgattcgggtttgcgacgtttcgccccggc
caagaggacgttattcacgccgtgttggcgggacgcgatgccatggcggtcatgccgaca
gggcaggggaaatcgctctgctatcaattgccggcgactctgttacccggactcacgctg
gtgatttctccgcttatcgccctgatgcaggaccaagtgtcggccatgaagcagcggaaa
attgcggcggcggcatttcattccggtctcactgggctggaaaagaaccgggtgatgcag
gatctccatcaccggcgagttcaacttctctatctggcgccggagcggatgcaacacgat
ggatttctgcagcttttgcgttctctctgggtatcgctgctggttgtggacgaagcgcac
tgtatttcccagtgggggcatgatttcaggccggattttctcaagatcggccgcttgcgc
caggaacttacgaatccaccttgcctggcgctgacggccacggccaccgctcgtgtgcaa
acggatctgtgccagcggctatcacttcgcgatccctttcgactcgtcgctgggtttcgt
cgggccaacctcgctctctccgttcatctctctcagtctcgccaggataagctgtcgacg
ctgggacgcttggttcgtgagacgcagaaggggacaatcctcgtctattgtgctactcgc
cgagccgtggaggaggtggctgcatggttgggacaggcttacccctcggtcggctattac
catgccggtctttcagatgaagaacgacggatagtccacgaggaatttcgccgaggaacg
gtgcgaattctggccgcgaccaatgccttcggcatgggcatcgataaggcggacgttcgt
ttggtcgtccattttgacatcccaggaagtctagaggcctattatcaggaggtggggcgt
gccggtcgcgatggacggcttgcggcgtgcgcgttgctgttccatgaacgcgatgtggcc
acgcaggaatactttattgagcaggcatcaaaagatcctgagggcaccgatcgcgcggag
cgaatgaagacgcttcttcaagaaatgttggggtatgtctcaacgtcgacctgtcggcag
ctcgcgattcttgagtatttcagcgatgacgccgaacgggcgttgggcccttgcgggttg
tgtgatcgctgtgtcacgccggtcagacaggcgacccgggcggcctctcaggagaccacc
gtttccgcgcgagatgtgctggaaacggtctcctggtgtatggggcgcttcggcttgaat
cgagttgttgatatccttcgtggaagccgctcaaaagcgctgctggcctgcggtgcggag
gagtgcccgacctacggaatctgtcgtacacagtcgaaaccgtctgtcattgcgggagtg
aaggtccttatcgactcagggtatcttcgggttgaaggctctgagtatcccacgcttgat
gtgacgagcaaaggacgagaggttctgcaagggctttgctccgtagccatgggacaagcg
gcggactatctgtccagtgcgtcggtgatgaaaccccgtcactcatcaactgtcctggct
ggtgtccctgcggctatgccgcctgatcgacaacttgttgaaagactcagacaacttcgc
tcgcaattggccgaggaagagggcgtggcgcccttcctcattttccatgacaaaacgttg
aaggcgatcgccgggtacaaaccagggacgacggcggctctgttagagattcccgggatc
ggcgagatgaaagctgaacgatacggacggcgggtgttggctgtggtcaatgatgatcaa
taa
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