Candidatus Nitrospira kreftii: Nkreftii_001123
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Entry
Nkreftii_001123 CDS
T08052
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nkf
Candidatus Nitrospira kreftii
Pathway
nkf03410
Base excision repair
nkf03430
Mismatch repair
nkf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nkf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Nkreftii_001123
03430 Mismatch repair
Nkreftii_001123
03440 Homologous recombination
Nkreftii_001123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nkf03400
]
Nkreftii_001123
DNA repair and recombination proteins [BR:
nkf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Nkreftii_001123
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Nkreftii_001123
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Nkreftii_001123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF34_NIF3
Motif
Other DBs
NCBI-ProteinID:
QPD03349
UniProt:
A0A7S8FC17
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Position
1063628..1065325
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AA seq
565 aa
AA seq
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MQPKLWVIRQVDPIQCGRLSQALSISSATASLLLNRGVTSLDQATAWMSPIHTHDPFLIP
DMERAVDRLHHAMQRREQVCFYGDYDVDGMSATSIYLSFFRTRGANVRAYVPHRLREGYG
LNESAVRTLAREGVSLLVTSDCGTTSHHEISLANQLGLDVIVTDHHQTDTDMPPALAVMN
PHRQGAKYPFNGLCSGGLAYKVSQAYEAKYGSGSVPLESLLDLVALATIADVVPLQDENR
LFVREGLAHITRGARCGIRALKHVAGVNRECTAETVAFKLGPRLNAAGRLDEAIKGVKLL
TTESEREANALAEELDRLNQVRRELEGTILEEALAQATSRELSGGIVLYARGWHLGVVGI
VAARVMERFHRPTVVIAVNEDGIGKGSARTVPGFDLYQALAGCRDLLVAFGGHPSAAGVT
IQESQLPAFCERFSAIAEKWIQDTQSTPILHVDSEVRLNEITLTLLREIGTLHPFGAGNP
EPTFVVKGLKVINARVVGDKHLKMTVRQDGSLPFDSIGFGMKSLEDRGLSPATPIDVACT
PELNHWNGYDRIQLRIRDIRATGCE
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcagcccaagctctgggtcattcgtcaagtcgatcccatccaatgcggccgtttatcc
caggccttatccatctcttccgccacggcttcactgcttctcaatcgtggcgtcacgagc
ttggaccaggcaaccgcctggatgtctcctattcacactcatgatcccttcttgattcct
gatatggagcgcgcggttgaccgtctgcatcacgcgatgcaacggcgtgagcaggtctgt
ttttacggtgattacgatgtggatggcatgtccgccaccagcatttacttgtcattcttc
cgcacacgtggggctaacgtcagggcgtatgtgcctcatcgcctacgtgagggctacggg
cttaatgagtccgctgttcggaccttggcgcgagaaggagtatctctgttggtcacttct
gactgtggtaccacatcgcaccacgaaatcagccttgccaaccaactcggcctggatgtg
atcgtcacggaccaccatcaaacggatacggacatgccgccggcgttagccgtcatgaat
ccccatcggcaaggggccaagtacccttttaatgggctgtgttccggtggactggcctat
aaagtttcacaagcctatgaagcgaaatacggatccggctcagtgccgttggagtcgctg
ttggatctcgtcgcacttgccaccattgccgacgtcgtgccgctgcaggacgaaaaccgt
ctgtttgttcgggaaggcctggctcacatcacacgaggcgcacgctgtggcatacgggcg
ttgaaacacgtggctggtgtcaatcgcgagtgcacggcggaaaccgtcgcgtttaaactc
ggccctcgactcaatgcagcaggtcggctagatgaagctatcaagggcgttaagttactg
accacggaatctgaacgagaagccaacgcgttggctgaagaacttgaccggttgaatcaa
gtgcgccgtgagcttgaaggcacgatcttggaagaagcgcttgctcaggcaacgtctcga
gaattatccggtgggattgtcttgtacgcgcgagggtggcatctaggcgtggtaggaatc
gtggctgcccgtgtcatggagcgtttccatcgcccgaccgtggtgatcgcggtcaatgag
gacggcattggaaaaggatcggcgcggacggtgccggggttcgacctgtaccaggcctta
gcgggttgtcgagatctgctcgtcgcgtttggtgggcacccgagtgcggccggcgtgacc
atccaggaatcgcagttacccgcattttgcgagcggttttccgccattgcagagaagtgg
atccaagacactcaaagcactcccatacttcatgtcgactcagaagttcggttgaatgag
attacactcacgctgcttcgtgaaatcggaactttgcatcccttcggcgcagggaatcct
gaaccgacgtttgtcgtcaaagggttgaaggttatcaatgctcgagtggtcggcgacaag
catctgaagatgacggtccggcaggatgggtccttgccgtttgacagcatcgggtttggg
atgaaatcgctcgaggatcgtggattgtctcccgccacccccattgatgtggcctgcaca
ccggagctgaaccattggaatggctatgaccggattcagttgcgcatccgggacatacga
gcgacagggtgtgagtaa
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