Candidatus Nitrospira kreftii: Nkreftii_001993
Help
Entry
Nkreftii_001993 CDS
T08052
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nkf
Candidatus Nitrospira kreftii
Pathway
nkf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nkf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nkreftii_001993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nkf03019
]
Nkreftii_001993
03009 Ribosome biogenesis [BR:
nkf03009
]
Nkreftii_001993
Enzymes [BR:
nkf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Nkreftii_001993
Messenger RNA biogenesis [BR:
nkf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Nkreftii_001993
Ribosome biogenesis [BR:
nkf03009
]
Prokaryotic type
rRNA helicases
Nkreftii_001993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QPD04219
UniProt:
A0A7S8FDS7
LinkDB
All DBs
Position
complement(1929116..1930858)
Genome browser
AA seq
580 aa
AA seq
DB search
MKHSQRSESTTPTATGFSPGFASLGLEASLLTTLEALGYEEPTPIQREAVPPLLAGRDLL
GQAATGTGKTAAFALPMLQRIGHGSKTRPSALVLVPTRELAIQVGEAVQRYGKELRTSVL
PVYGGQAIGPQLYALKRGVDIVVATPGRALDHIRRGVLKLEHVQIVVLDEADEMLDMGFA
DDLDAILQQTPKTKQTALFSATMPPRIRSIAHRHLHNPVEITIAKEPVKAGTAPRVKQTA
YIVARPHRAATLARVIDVAGAKSALVFCRTRLEVDEVTAMLTARGCRAEAIHGGMSQGQR
DRVMQAFKAGQTELLIATDVAARGLDIPQVSHVINYDLPSSAEVYVHRIGRTGRAGREGA
AITILDPREQRLLRSIEQHTKAQVIVVPVPSVADLRAKQLERIQAAMVEVLQDGKLDGFA
PLVDRLVASHSSADVAAAAIKLLVRAQGGERPEQEIPGMPARQPEFGRPVRQAGRYDDRS
RTLSSRSDRQPTGPPRQGQRQAGMARVYIGAGREVGIRPGDLVGAIANEAKVRSNVIGAI
EIEDRFSIVDVPESMAAGIVEILGRVRIKGRKVPVRLFRE
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatagccagcgctccgagtccacgacaccgactgcgacaggcttttcgccgggg
ttcgcttcattagggctggaggcgtcactcctcacgaccctggaagccctcggctacgag
gaaccaactccgatccagcgcgaggcggttcctccactgttagccggacgagatcttctc
ggacaagccgccactggaacggggaagacggcggcctttgccttgccgatgctgcagcgc
atcggtcatggctccaaaacacgcccgtcggcactggtactcgttcccacgcgagagttg
gcgatccaagtcggagaagcagtccagcgctatggcaaagaattacgaaccagcgtgctg
ccggtctacggaggacaggcgatagggccacaactctacgcactcaagcgcggagtggat
atcgtcgtggcgactcccggcagagccctcgatcacattcgtcggggggtcctcaaactg
gagcatgtacagatcgtcgttctggacgaagcggatgaaatgctcgatatgggattcgca
gatgatctcgatgccattttgcaacaaacacccaagacgaaacagaccgccttgttctct
gcaacgatgccgccgagaattcgttcaatcgcccaccggcatctccacaatccggtcgag
attacgatcgccaaggaaccggtcaaggccggtactgccccgcgtgtgaagcagacagcc
tatatcgtggccagaccccatcgagcggccacgctggcccgtgtgatcgacgtggccggt
gcaaagtccgcgctcgtgttttgccgcacaaggttggaggtcgatgaggtcacggcaatg
ctgactgcccgcgggtgtcgggccgaggccatccacggcggcatgagtcaagggcagcgt
gaccgcgtcatgcaagcgttcaaagccggacaaacagagctactgattgcgaccgatgtc
gccgcgcgcggattggatattccacaggtatctcatgtgatcaactacgatctgccgtcc
tccgctgaggtctatgtccatcgaatcggccgcaccggtcgagccggacgggaaggtgcg
gcgatcacgatcctcgatccccgtgaacaacggcttttacggagtatcgagcaacataca
aaggctcaggtcatagttgtgccggtgcccagcgtggccgatctccgcgccaaacagttg
gaacgtatacaggctgccatggtcgaggtcttgcaagatggaaaactcgatgggtttgcg
ccactcgtcgatcgattggtcgcctcccattcatcggccgacgtggccgcagccgcgatc
aagctgcttgttcgggcccaaggtggggagcgtccagaacaagagattcccggaatgcct
gctcggcagcctgaattcggaaggccggtccgtcaggctggtcgctacgatgaccggtct
cgcaccctatcctcccgatcggatcgtcagccgacagggccaccacgtcagggacagcga
caggccggcatggcacgggtatatattggggctggacgcgaggtagggatcaggccgggc
gatcttgtgggggccatcgccaacgaggcaaaggtccgctccaacgtcatcggcgccatt
gaaattgaagatcggttttccattgtcgatgttccggaatccatggccgccggcatcgtt
gaaatcctgggtcgtgttcgcatcaaaggccggaaggtaccggtccgattatttcgtgaa
tag
DBGET
integrated database retrieval system
