Candidatus Nitrospira kreftii: Nkreftii_003890
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Entry
Nkreftii_003890 CDS
T08052
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nkf
Candidatus Nitrospira kreftii
Pathway
nkf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nkf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nkreftii_003890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nkf03019
]
Nkreftii_003890
03016 Transfer RNA biogenesis [BR:
nkf03016
]
Nkreftii_003890
Enzymes [BR:
nkf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Nkreftii_003890
Messenger RNA biogenesis [BR:
nkf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Nkreftii_003890
Transfer RNA biogenesis [BR:
nkf03016
]
Prokaryotic type
tRNA degradation factors
Nkreftii_003890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
QPD06116
UniProt:
A0A7S8FHU8
LinkDB
All DBs
Position
complement(3827526..3829640)
Genome browser
AA seq
704 aa
AA seq
DB search
MVHVVEVDIAGRTLRLETGRVAKQADGSIWASYGDTVVLATAVAAQTAKPGIDFLPLTVD
YQEKAYAAGKIPGGYFKREGRPAEKEVLTSRLIDRPIRPLFPEGYYFETQVIASVLSADK
TGSSDVIGITAASAALAVSNIPFNGPVAGVKIGRIKGQLVVNPDLESIEQSDLHLVVAGT
ADAVMMVEAGANELPEQTMLEALELAHSEIKKIVKKISELAQKVGKIKRTVAAESIDPQL
QAEIKALVAQPIRDAIMISNKTARQERLDQVLADAIEKLKKPEDLSRERHIKIVFHQLEY
TEVRKMILEKQSRADGRGPADIRPITCEVGALPRAHGSAIFTRGETQSLAVVTLGTTDDE
QRIDALEGEYTRTFMLHYNFPPFSVGEARPLRTPGRREVGHGALAERALKPVIPNKDVFP
YTLRIVSEILESNGSSSMATVCGGTLAMMDAGVPIKEPVAGIAMGLIKEGEDVIILSDIL
GLEDHLGDMDFKVCGTKNGVTALQMDIKIGGITTALMQQALEQARLGRLHILGHMSKALP
EPRTHLSPFAPRIHTMKVKQDKIRDIIGQGGKTIRGIQSDCGVKISVEDTGVVTIASSDE
ASLQKAKGIIDRLTEEVEVGKVYTGTVRKIMDFGAFVEVLPGTDGLVHISQLAHHRVKAV
ADEVSEGDEILVKVLEIDRQGKIRLSRKETIPVPTGSPKDSSDE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggtacacgtcgtagaagtcgacattgcaggcaggacactccgtcttgaaaccgggcgg
gtcgccaaacaggcggacggatcaatttgggcgtcatatggggatacggtcgtcctcgcg
acggccgtggccgcacaaacggccaagcctggaatagatttccttcctctgaccgtcgac
tatcaagaaaaggcctatgcagcggggaaaatccccggtggctattttaagcgcgaaggt
cgaccggctgaaaaagaagtgctgacaagtcgattgatcgatcgcccgatccgtccactc
tttccagaaggatattatttcgaaacacaagtgattgcctcagtgctctcagccgataag
accggttcttccgacgtcatcgggatcactgcggcatccgctgccctcgcggtctcgaat
atcccgttcaatggtcccgtggctggcgtgaagatcggccggatcaagggtcaactcgtc
gtcaatcccgatcttgagtccatagagcagagcgatcttcatctggtggttgcagggacc
gcggacgctgtcatgatggtggaagcaggtgccaacgaattgcctgaacagactatgctt
gaagccctggaactagcacactccgagattaagaagatcgtcaagaagatctctgagttg
gctcagaaagtcggaaagatcaagcgaacggtggcggctgagtcgatcgatccacaatta
caggccgagatcaaggcattggtcgcgcagccaattcgtgacgccatcatgatctctaac
aagaccgcgcggcaggaacgattggatcaggttctggctgacgctatcgaaaaattgaaa
aaaccagaggatctctcccgtgaacgacacatcaagatcgtgttccaccaactggaatac
acggaagttcggaaaatgatcttagagaaacagtcacgagccgatggtcggggaccagcc
gacattcgcccgatcacctgcgaagtaggcgcattgccacgagcgcacggttctgcgatt
tttacacgaggcgaaacacaaagcttggcggttgtgaccttgggaaccaccgatgatgag
caacgcattgacgcgctggaaggtgagtacacgcgcacgttcatgctccactacaacttt
ccacctttcagtgttggtgaggcgcggccgctgcgcacgccgggtcgacgtgaagtcgga
cacggtgcgttggctgaaagggcgttgaagccggttattccgaacaaggatgtgttcccc
tatacgctgcggatcgtttctgaaatactggaatccaatggctcgtcctcaatggcgacg
gtctgcggcggaacattggccatgatggatgccggtgtcccgatcaaggaacccgtggct
ggcatcgcgatgggtctgatcaaggaaggcgaggacgtcattatcttgtcggacattctt
ggtctggaggatcatttaggcgacatggacttcaaggtctgtgggacgaagaatggcgtc
accgcacttcagatggatatcaagatcggagggattacgactgcgctgatgcagcaggcc
ttggagcaagctcgtttgggacgactgcatatcctcggccatatgtcgaaggcgcttccc
gaaccgaggacccacctctcaccctttgccccccgtatccacacgatgaaggtcaaacag
gataaaattcgagacattatcggtcagggcggtaaaaccattcgtgggattcaatcagac
tgcggggttaaaatcagcgttgaggatacaggtgtcgtgacgattgcctcctctgatgaa
gcgtcgttacagaaagccaaaggcatcatcgaccgcttgaccgaggaagtggaagtgggg
aaggtctatacggggacagtgagaaagataatggactttggcgcatttgtggaggtattg
cctgggacggacggactggttcatatctcgcaactcgcgcatcaccgtgtgaaagccgtg
gcggacgaagtatcggaaggggacgaaattcttgtgaaggttctggagatcgatagacag
ggcaaaattcgactcagtcgaaaagaaactatcccggtgccgacgggaagcccaaaagac
tcatccgacgagtaa
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