Niastella koreensis: Niako_4603
Help
Entry
Niako_4603 CDS
T01679
Name
(GenBank) cell wall/surface repeat protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
nko
Niastella koreensis
Pathway
nko00040
Pentose and glucuronate interconversions
nko01100
Metabolic pathways
nko02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
nko00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Niako_4603
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Niako_4603
Enzymes [BR:
nko01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Niako_4603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Flg_new_2
CBM_6
Por_Secre_tail
Flg_new
Motif
Other DBs
NCBI-ProteinID:
AEW00861
UniProt:
G8TL22
LinkDB
All DBs
Position
complement(5733984..5735963)
Genome browser
AA seq
659 aa
AA seq
DB search
MKSRIFFLLCVLMTFFSLSYAQDQCAPVGWCTQNGGTTGGGNATPVTVSNISDLTSQANG
SGSRVIYVSGTMGAGVSTRVKVAANTTIIGLPGAKLYGGFDIKASNVIIRNMIVQGPGSV
DVDGVDCITIQDAAATNIWIDHCDIYDGQDGNLDISNGASYITVSWTKFHYTSASQNHQF
CNLIGSSDSKTSDRGRLKVTMVYNWWTTGVIERMPRVRFGQVHVVNNLFDSPGNNYCVRA
GIEADILVESNYFDGVNTPIDLYENNFTAVTSRNNVYNNTTGNTAGSGTSFTPAYSMNIA
PAANVKALVSNATCGAGATLPSPTQCGCGTSSSFVLTTSANPAAGGSVSRSPNASTYAPG
TVVTLTATPASGYTFTGWSDGASGTNTTTTVTMNANTSVTANFTTTGGGGGTGTTLRIDD
KSGTGTGYCSANGSRQNTYTGADGGYYINLSNSSGQGITWAVSAGAAGTYNLVWRYANAG
SQSATTARVLVNGVLVNGAVSFPKTATWSTWTTTAQIPVTLVAGANKIRLETTTAAEFAN
IDWIEISGNNPTEASCSAATGARMETLVTGVNPAEVKPMVLPNPTTGLSTLRFGVTTIEK
VKVNLYATDGRLIKTLTNKTYAPGTYNIPVDYTGLQKGVYFIFIHNGNSKTVLQNTFVH
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcagaatatttttcctgctgtgcgtgctgatgacttttttttcgttgtcgtat
gcacaggaccaatgcgcacctgtaggctggtgtacacaaaacggcggtacaacgggtggt
ggtaatgcaacacctgtaactgtatccaatatcagtgatcttacttcccaggccaatgga
tcaggctcaagagttatttatgtaagcggcaccatgggggctggcgttagtacccgggta
aaagtagctgccaataccaccatcattggtttacccggcgctaagttgtatggtggtttc
gatatcaaggcaagcaatgtaatcataagaaatatgatcgtacaggggcctggttcggtg
gatgtggatggcgtggattgcatcaccatccaggatgctgctgccaccaatatctggata
gatcattgcgatatttatgacggtcaggacggtaatttagacatctccaatggcgccagt
tacattaccgtttcctggacgaaattccattacacttctgcttcccagaatcaccagttt
tgcaatttaataggaagctcagacagcaaaacatctgaccgcggccggttgaaagtaacc
atggtatacaactggtggaccacaggagtgattgaacgcatgccccgcgtacgttttggt
caggtgcatgtagtgaataatttgttcgatagccccggaaacaattattgtgttcgtgcc
ggaatagaagccgatatcctggtagagagtaattattttgatggcgtaaatacacccatc
gatctgtacgaaaataatttcaccgcggtaacctcccgcaataacgtgtataacaatacc
accggtaacacggctggcagtggtacttcttttacgcctgcttattccatgaatatagcc
ccggcagccaatgtaaaagctttggtaagtaacgccacctgcggggcaggggctacgttg
ccttcgcccacccaatgtggttgcggcaccagcagttcctttgtgttaaccacatcggcc
aatcccgctgcgggtggttcagttagccgcagcccgaacgccagtacttatgcaccgggc
accgttgttacattgactgctacgcctgcatcgggttatacatttaccggttggagcgat
ggcgcaagtggtaccaatactaccaccactgttaccatgaatgcaaacaccagtgttact
gccaacttcaccaccactggcggtggcggaggcacgggcactactttacgcatcgatgat
aaatcaggtacaggtaccggttattgcagcgccaatggttccaggcaaaatacttatacc
ggggcagatggcggttattatataaacctgagcaattcgagcggacagggaattacctgg
gcagtaagtgccggagcggctggtacgtataacctggtttggcgttatgccaatgccggc
tcacaaagcgctacaacggcaagggtattggtaaatggggtactggtgaatggggcggtg
tccttccctaaaacagccacctggagcacctggaccactactgcgcaaattccggttaca
ttagtggccggtgcaaacaagatcaggctggaaacaacaactgcagcggagtttgccaac
atcgactggatagaaatttccggaaataatccaaccgaggcttcctgcagcgctgctacc
ggtgcaagaatggaaacacttgttacgggtgttaacccggctgaagttaaaccaatggtg
ctgcctaatccaacaaccgggttgtcgacactccgttttggggttactacaattgaaaaa
gtgaaagtgaacctgtatgcaactgatgggcggttaataaaaacactgaccaataaaacc
tatgcgcccggtacctataatatacctgtagattataccggcttacaaaaaggtgtttat
tttatattcatacataacggcaattcaaaaacggttctgcagaatacgttcgtacactga
DBGET
integrated database retrieval system
