Niastella koreensis: Niako_5596
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Entry
Niako_5596 CDS
T01679
Name
(GenBank) 2,3 cyclic-nucleotide 2-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
nko
Niastella koreensis
Pathway
nko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Niako_5596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nko03019
]
Niako_5596
Messenger RNA biogenesis [BR:
nko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Niako_5596
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_KhpA-B
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
AEW01828
UniProt:
G8TJT0
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All DBs
Position
6983058..6984626
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AA seq
522 aa
AA seq
DB search
MDQGMLTTIIVGILALGAGIGLGKAIFAKNTRLKIEEAENQARKIVADAQTNAETIKQQK
QLEAKEKFLALRGEYDKEVTERNRKIQESENRARQKEQGINAKSDQLDKQIKENEAIKEN
LNRQIEVVSLKRTELEKHQEEHIRRLEKIAGLTAEEAKKQLVESLKQEAHTQALALQQEI
VDDARQKANKEARKIIIQTIQRTAAEQAIENSITVFNLESDEIKGQIIGREGRNIRAIEA
ATGVDLIVDDTPEAIILSSFDPLRREIARLSLQRLVADGRIHPARIEEVVEKTRRQIEEQ
VIEIGERTVIELGIHGLHKELVRIVGKMRFRSSYGQNLLMHSREVANLCGIMAAELGLNP
KLAKRAGLLHDIGKVPDEESELSHALLGAKLAEKYGENPAVVNAIGAHHDEMEMQYVISP
IVQACDAISGARPGARREIMQQYLQRIKDLENLALSYQGVEKAYAIQAGRELRVIVEADK
VTDNDSDKLSFDIAQKIQTEMTFPGQIKVTVIREKRAVNVAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaggtatgttaaccactataatagtaggtattttggccctgggcgcaggaata
ggcctgggaaaagccatttttgccaaaaacacccgactaaaaatcgaagaggccgaaaat
caggcccgcaaaattgttgccgatgcacaaacgaatgctgaaaccatcaaacaacaaaaa
cagctcgaagccaaagaaaagttcctggcgctgagaggcgaatacgacaaagaagttaca
gaacgtaaccgcaaaattcaggaaagtgagaaccgggcccgtcagaaagaacagggcatc
aatgcaaaaagtgaccagctcgacaaacagatcaaagaaaacgaagccatcaaagaaaac
ctgaaccgccagatagaagtagtaagcctgaagcgcaccgagctggaaaaacaccaggaa
gaacacatccgccgcctggaaaagattgccggtttaaccgcagaagaagctaagaaacaa
ttagttgaaagtttaaaacaggaagcccacacccaggcgctggccctgcagcaggaaatt
gtggacgatgcccgtcaaaaggccaacaaagaagcccgcaaaatcatcattcaaaccatt
cagcgtaccgcagctgagcaggctattgaaaactccatcacggtatttaacctcgaaagc
gatgaaataaaaggccagatcattggtcgtgaaggccgtaacatccgcgctattgaagcc
gctaccggtgttgacctgatcgttgatgatacgccggaagccatcatcctttcttccttc
gatccccttcgccgcgaaattgcccgtttaagcttgcaaagactggtagccgacggccgt
attcaccccgcccgtattgaggaagtggtggaaaaaacccgccgccagatcgaagagcag
gtaattgaaattggtgagcgtactgtaattgaattaggtatccatggtttacataaagag
ctggtacgtatcgtaggtaaaatgcgtttccgttcttcatacggtcaaaacctgctgatg
cacagccgcgaagtggccaacctgtgtggtattatggctgctgaactgggtttgaacccc
aaactggcaaaacgcgccggtttgttacatgatattggtaaagtgcccgatgaggagtct
gaactgagccacgccctgctgggagccaagctggccgaaaaatatggtgagaacccagcc
gtggtaaacgctatcggcgcccaccacgatgaaatggaaatgcaatatgtgatctccccc
attgtacaggcctgtgacgccatcagcggcgcccgccccggtgcacgcagagagattatg
caacaatacctgcaacgtattaaagacttagagaacctggcgctgagctaccagggggtt
gaaaaagcttacgctattcaggccggtcgtgagttacgggtaattgtggaagcagataaa
gtgaccgataacgactcggacaaactgagtttcgacatcgctcagaagatccagaccgaa
atgaccttccccggacaaattaaggtaaccgtgatcagggaaaaaagagccgtaaacgta
gccaaataa
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