Niastella koreensis: Niako_6015
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Entry
Niako_6015 CDS
T01679
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nko
Niastella koreensis
Pathway
nko03420
Nucleotide excision repair
nko03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Niako_6015
03430 Mismatch repair
Niako_6015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nko03400
]
Niako_6015
Enzymes [BR:
nko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Niako_6015
DNA repair and recombination proteins [BR:
nko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Niako_6015
MMR (mismatch excision repair)
Other MMR factors
Niako_6015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
DUF3799
Dna2
AAA_11
IucA_IucC
Motif
Other DBs
NCBI-ProteinID:
AEW02241
UniProt:
G8T7I6
LinkDB
All DBs
Position
7464869..7468054
Genome browser
AA seq
1061 aa
AA seq
DB search
MSVNRERLNQRFVEEYQKLNPQQRLAVDTIEGPVMVIAGPGTGKTQILASRIGKILLDTD
SQPQNILCLTYTDAGVVAMRRRLSQFIGPDAYRVNIYTFHAFCNDIIQENLSLFEKTALD
PISDLERIELFKNLIDTFPKNHALKRYRGDVYYEIHNLQSLFSTMKREGWTPAFINERID
AWLADLPTRDEFVYKRAYKGFKAGDLKKDKFEEEKEKMEKLRAAVNEFDRFQKLMRDRNR
YDFDDMINWVIKAFEENPALLNRYQEQFLYILVDEFQDTSGTQNQLVKLLISFWETPNVF
VVGDDDQSIYRFQGANVENMLQFFNSYRESLLTVVLTNNYRSAQPILDVSMTLINNNQER
LVTQIEGLSKNLKSSHPRFFALEPTDAIPAIKEYETQRHEMVDITLQVQELLDQGIQPGK
ISIIYRENRYGEELGQYFKTLNIPVYSKRHLNLLTEPFAKKIILLIKYIAAEHDIPYGGD
EMLFEILHFDWFNIPPIEIAKLSIEVADRAFGKDKTSLRRLLYDKGNTPPADLFSRGLHP
GLLQATKAMERLISSVPNVTLQVLVESIIRRTGLLNIIMQSPEKAWMMQVLTALFDFIKE
ETHRNPLLQLTDLVEIFDLMEKEGLTLPLVQVSGNDKGVNLLTAHGSKGLEFEYVFIAGV
NASSWEKKRKPGGGYKIPENVFLSQANGSAVNEAGKSDKDIEELRRLFYVALTRAEQHLF
ISYCRYKNDGKELEPSMFLAEIQEQHQLPVEKVFISDEELTEFQIVQFGETEAPEIGRIE
EDFITALLDRFVMNVTALNNYLKCPLEFYFKNLLRIPSPKNEATEFGSAIHHALQRFFEK
MKENNNVFPGKIEFVDDFSWYMHRHRENFTREQFERRLEYGHEVLSNYYDKYIFTWNRIV
TVERNIRNVVVNGVQLKGKLDKLEFDGKQVNIVDYKTGDPDKARAKLQPPSEKDPNGGDY
WRQAVFYKILVDNYESRDWQVISTEFDFIEPDKKKVYRKEKVVIKPSDITTVSQQIVQVW
EKIQNREFYIGCGKDDCHWCNFVKTNKMAIALHDLTSEEEA
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgaaccgggagcgccttaatcagagatttgttgaagaataccagaagctgaac
cctcagcaaagacttgctgtcgatactattgaaggccccgttatggttattgccgggccg
ggcaccggtaaaacccagatcctcgccagccgaataggcaaaatactgctggataccgac
tcacaaccacagaacatcctttgtttaacgtataccgatgcgggtgtggtggccatgcgc
cggcgcttgtcgcagtttattgggcccgatgcctaccgcgttaacatttatacttttcat
gctttttgtaacgatatcatccaggaaaacctgtcgctttttgaaaaaacagcgctggac
cctatttctgacctggaaagaattgagttgttcaaaaacctgatcgatacttttcctaaa
aaccacgccctcaaacgctaccggggcgatgtatactacgaaatacataacctgcaatcg
cttttcagtactatgaaacgcgaaggctggacacccgcttttatcaacgaacgcatcgac
gcctggctggccgacctgcctaccagggatgaattcgtttacaaacgggcctacaaaggt
ttcaaagccggcgatctgaagaaggataagtttgaggaagaaaaagagaagatggaaaag
ttgcgggcagcagtaaatgaattcgaccgttttcaaaaactgatgcgcgaccgcaaccgg
tacgactttgacgacatgatcaactgggttatcaaggcttttgaagaaaacccggccctg
ctgaaccgttaccaggaacaattcctgtacatcctggtggatgaatttcaggacaccagc
ggtacacaaaaccagctggtaaagctgttgatcagcttttgggaaacacccaacgtattt
gtggttggcgacgatgaccagagtatttaccgctttcagggcgccaacgtggagaacatg
ttacagtttttcaactcctaccgcgaaagcctgctcaccgtggttctcaccaataattac
cggtcggcccagcctattctcgatgtttccatgacactcatcaacaacaaccaggagcgg
ttggtgacacaaattgaaggcctaagcaaaaatttgaaatcatcgcatccacgcttcttt
gcactggagcctacggatgccattcccgcaataaaagaatatgaaacccagcggcacgaa
atggtggatataaccctgcaggtgcaggagttattggaccagggcatacaacctggcaaa
atcagcatcatttaccgcgaaaacagatatggtgaggaactgggccagtatttcaaaacc
ctgaatatcccggtttacagcaaacgtcacttgaatttattgacggaaccatttgccaaa
aagatcattctgctcatcaaatacatcgccgccgaacatgatattccttatggcggtgat
gaaatgttgtttgagatcctgcattttgactggttcaacattccgcccattgaaattgcc
aagctgagcatagaagtggccgacagggcgtttggtaaagacaaaacctcgttgcgccgc
ctgctgtacgacaagggtaacacgccgcctgccgatctgttcagcagaggcctgcacccg
ggtttactacaggctaccaaagcaatggaacggcttatatcatcagtacccaatgttacc
ttacaggtactggttgaaagtatcattcgccgtacaggtttgctgaacatcattatgcaa
agtcccgaaaaagcgtggatgatgcaggtgttaaccgccctgttcgattttataaaagaa
gaaacgcaccgcaatcctttactgcagctgaccgacctggtggagatcttcgacctaatg
gaaaaagaagggttgacattgccgctggttcaggttagcggtaatgataaaggtgtgaac
ctgttaaccgctcacggttcaaaaggactggaatttgaatatgtgtttattgcaggcgtc
aatgcctcctcctgggaaaagaagcgtaagcctggtggtggttacaaaattcccgagaac
gtattcttaagccaggccaatggctccgcagtaaacgaagcaggcaaaagcgataaggat
attgaggaactgcgccggcttttttacgtggcgcttacccgtgccgaacaacacttattc
atttcgtactgccggtataaaaacgatggtaaggaactggaaccctccatgttccttgca
gaaatacaggaacaacaccagttgcctgttgaaaaggtattcatcagcgatgaagaatta
actgagtttcagatagtacaattcggggaaacagaagcgcccgaaatcggccgcatagaa
gaggattttatcactgccctgctcgacaggtttgtgatgaacgtaactgcattgaacaat
tatttaaaatgtccgctcgagttttatttcaaaaacctgctgcgcatcccgtcacccaaa
aatgaggctaccgaatttggttcggccattcaccatgcactgcaacggttctttgaaaaa
atgaaggaaaacaacaatgtgttcccgggcaagatcgagtttgtggatgattttagctgg
tacatgcatcgccatcgcgaaaactttacccgcgaacagtttgaacgccgccttgaatac
gggcatgaagtactgagcaattattacgataaatacattttcacctggaaccggatcgtt
acggttgaaaggaatatccgcaatgtggtagtgaatggggttcagcttaagggtaagctt
gacaaactggagtttgacggcaaacaggtgaacattgtggactataaaaccggcgacccg
gataaagcaagggccaaactacagccacccagcgaaaaagaccccaatggcggtgattac
tggcgccaggccgtgttttataaaattctggtagataactacgaaagccgcgactggcag
gttatcagtaccgaatttgactttattgaacctgataaaaagaaagtataccgcaaggaa
aaagtagttataaaaccatctgatattaccaccgtttcccagcaaattgtgcaggtatgg
gaaaagatccagaaccgggagttttatattggctgcggcaaagacgactgccactggtgc
aattttgttaaaaccaataagatggcaatcgctttacatgatctcacttctgaggaagaa
gcctga
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