Niastella koreensis: Niako_6407
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Entry
Niako_6407 CDS
T01679
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nko
Niastella koreensis
Pathway
nko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Niako_6407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nko03019
]
Niako_6407
03400 DNA repair and recombination proteins [BR:
nko03400
]
Niako_6407
Enzymes [BR:
nko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Niako_6407
Messenger RNA biogenesis [BR:
nko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Niako_6407
DNA repair and recombination proteins [BR:
nko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Niako_6407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
RecQ-1-like_HTH
RecQ_Zn_bind
HRDC
SAP_new25
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AEW02631
UniProt:
G8TDZ7
LinkDB
All DBs
Position
complement(7904032..7906323)
Genome browser
AA seq
763 aa
AA seq
DB search
MSTTSKKTSSKTAKLQKDTTVAKKKASNSSTTISSASLHQALQEQFGFDHFKGNQEAIIK
TLLAGKDTFVIKPTGGGKSLCYQLPAIMSEGVAIIISPLIALMKNQVDLVRSYSSKDDVA
HFLNSTLTKKEIREVHDDLLSGRTKMLYVAPETLTKQENLEFFSDLKLSFFAVDEAHCIS
EWGHDFRPEYRRLREMMTQINPDIPVIALTATATPKVQSDIIKNLALKDPEIYISSFNRP
NLYYEIQPKIKKDQTIKNIVRFIVSMKGKSGIIYTLNRKTTEELADMLMANGIKAVAYHA
GLDSKLRAERQDLFLNEDVQVIVATIAFGMGIDKPDIRFVIHFNIPKSIENYYQETGRAG
RDGLEGKCILYYSHKDVSKLEHLMRDKPLSEREVGAQLISETVAYSESGVCRRKILMSYF
GEEYSEPNCGQCDNCLHPKEQVEAKDNVVKVLKAIKALDERFAADYTVNIIIGRLTPNIA
MYRHESLPEFAIGNDQPDHYWNSLIRQMLLEGLLSKDIEEYGVLKITKNGEAFAKKPKSF
KIVLNNLYEEANADDDEGSEAATGAAADEKLFEMLKELRQKEAKRKSLPPFVIFLETSLQ
DMATLYPTKLEELEKCSGVSKGKALRYGKPFIELVARYVEENNIVRPDDFVMKSVVNKSG
NKVYIIQQTDKKIPLEVIAKNKGWRMDEMLEEMETIAASGTKLNLDYAIAEMLDDNEQEE
ILEYFKGCETSSLQLALEELAEHNFNWEQLKIMRIKFLALYGM
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccacatcaaaaaaaacgtcgtctaaaacggcaaaacttcagaaagacactaca
gtagcaaagaaaaaagcgtcaaactcttctactactatctccagcgcttccttacatcaa
gcacttcaggagcaatttggattcgatcatttcaagggcaaccaggaagccattataaaa
acattattagcaggaaaagatacgtttgtaattaagcctaccggtggcggcaaaagcttg
tgctaccagttaccggccatcatgagcgaaggcgttgctataatcattagcccgcttatt
gcgttgatgaaaaaccaggttgacctggtgcggagttacagtagtaaagatgatgtagcg
cattttcttaactccactttaacaaaaaaggaaatacgcgaggtgcacgatgacctgctt
agcggacgtacaaagatgttgtatgtagcgcccgaaacattgaccaagcaggaaaacctg
gagttcttctcagatctgaagctttctttttttgcggttgatgaagcacactgtatttct
gagtggggacatgatttccgcccagaatacagaagactgcgtgaaatgatgacgcagatc
aatccagacattccggttatagccttaaccgccacagctactcctaaagtacaaagtgac
attataaagaacctggctctgaaagacccggagatctatatttcttcttttaaccgcccc
aacctgtattacgaaatacagcccaagatcaagaaagatcaaacgatcaaaaacattgtg
cgtttcattgtttcaatgaaaggcaagagcggtatcatttatacgttgaaccgtaaaaca
actgaagagctggccgacatgctgatggccaatggcattaaagccgttgcgtaccatgcc
ggtttagacagtaagttgcgcgcagaacgccaggacctctttttaaatgaagatgttcag
gtgattgttgccaccatcgcttttggaatggggatcgacaaaccggatatccgttttgta
attcactttaacattcccaagagcattgaaaactattaccaggaaacaggccgtgcaggt
cgtgatggactggaaggaaaatgtattttatactattcgcataaagacgtatcaaagctg
gagcatttgatgcgcgacaaaccgcttagtgaacgtgaagttggcgctcagttgatcagc
gaaacagtagcctattccgaaagcggtgtatgccgccgtaagattctgatgagctatttt
ggagaagaatactccgagcctaattgcggacaatgcgataactgtttacatccgaaagaa
caggttgaagcaaaagataacgtggtgaaggtgttgaaggctatcaaagcgcttgatgaa
cgctttgctgcagactacactgttaacatcattattgggcgtttaacccccaatattgcc
atgtaccgacatgaaagccttcctgagtttgccattggtaacgaccagccagaccattac
tggaattcattgatccggcaaatgctgctggaaggtttactaagcaaggatattgaagaa
tatggtgtattaaagatcactaagaatggggaagcatttgccaaaaagcccaaatcgttc
aagattgttctgaacaatttgtatgaagaggcgaatgccgatgatgatgaaggttctgaa
gctgccaccggcgccgcggctgatgaaaagctgtttgaaatgctgaaggagctgcgccag
aaagaagccaagcgtaaatcactgccgccgtttgtgatcttcctggaaacatctttgcag
gatatggctaccctataccctaccaaactcgaagagctggaaaaatgctcaggcgtaagt
aagggtaaagcccttcgttacggcaaaccgtttattgaactggttgcccgctacgttgag
gaaaacaatattgttcgccccgatgatttcgtaatgaaaagcgtggtgaacaagagcggt
aataaagtatacattattcaacaaacggataaaaagatcccgctggaggtaattgctaaa
aacaagggctggcgcatggatgaaatgctggaagaaatggaaaccattgctgccagcggc
accaagcttaaccttgattatgccattgccgaaatgctggatgataatgagcaggaagag
attttagaatatttcaaagggtgcgaaacctcctcgctgcagttagccctggaagaactg
gctgaacacaactttaactgggagcagttaaagatcatgcgtatcaagttcctggcactt
tacggaatgtaa
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