Niastella koreensis: Niako_6740
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Entry
Niako_6740 CDS
T01679
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nko
Niastella koreensis
Brite
KEGG Orthology (KO) [BR:
nko00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nko03016
]
Niako_6740
Enzymes [BR:
nko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Niako_6740
Transfer RNA biogenesis [BR:
nko03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Niako_6740
Prokaryotic type
tRNA splicing ligases
Niako_6740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEW02964
UniProt:
G8TK26
LinkDB
All DBs
Position
8265852..8267315
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AA seq
487 aa
AA seq
DB search
MAKLKISGKELRAIGYPEGPVISIAMNLMEKNYKYEKKEDVMELLRKILSAPVEYENDAV
LGLIAEQLIPKKEAEPGETIEPNATGIHFNVFGGENIEEGATHQMELASRLPISVAGALM
PDAHAGYGLPIGGVLATENAVIPYGVGVDIGCRMCLSVFPINPKELIQREHFFARELNEA
TLFGSPGLFDIATGHEVIERREFDELPLLKSLQAKAARQLGSSGSGNHFAEFGIIEVGEK
DAILGIDAGTYIGLLTHSGSRALGANIANHYTKIAREKRRLPGEAANLAWLNLDEQEGIE
YWMAMNLAGDYASACHHIIHAKIAKAIGEQPLTMVENHHNFAWKEMMIGPDGKMKELIVH
RKGATPAGKDVLGIIPGSMTAPGFIVKGKGETASVSSASHGAGRKMSRSKALNSITQKEL
KDQLQRHGVKLLGGGLDEAPNAYKDIEVVMKSQSALVDVVGKFSPKIVRMDGTAPKKWQK
TNSMDGE
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaattaaaaatttcaggtaaagaattaagagctattggatatcccgaagggccc
gtgataagcatagcgatgaatttgatggaaaagaattacaagtatgagaaaaaggaggat
gtgatggagttattgagaaaaatattgagtgcacccgtggagtatgaaaatgacgcggtg
cttgggttgatagcggaacaattgatacctaaaaaagaagccgagcctggcgaaaccatt
gaaccgaatgccaccggtattcattttaatgtatttggtggagagaatattgaagaagga
gctacgcaccagatggagctggcctcccgcttacctattagtgtagcaggcgctttaatg
cctgatgcgcatgccggctacggcctgcctataggtggggtgctggcaacagagaatgcg
gtgatcccttatggtgtaggcgttgatattggttgcaggatgtgtttaagcgtttttccg
attaatcccaaagaactgatacagcgggaacatttctttgcacgtgaattgaatgaagcc
actttgtttggtagtcccggtttatttgatattgctaccgggcatgaagtgatagaacgc
agggagtttgacgaactgcctttattgaaaagtttacaggcaaaagcggcaaggcagtta
ggatcgagcgggtcggggaatcactttgcagaatttgggattatagaggttggtgaaaaa
gatgctatactgggtattgatgccgggacctatattgggttattgacccattccggttca
agagcgcttggtgctaatatcgccaatcactatactaaaattgccagggagaagagacgg
ttacccggggaggcggctaatttggcctggttgaatctggatgaacaggaaggaatagag
tactggatggcgatgaacctggccggtgattacgcatctgcctgtcaccacattatacac
gctaaaattgccaaagcaataggggaacaaccattgacaatggtagagaatcaccacaat
tttgcctggaaggagatgatgatcgggcctgatggaaagatgaaggaactaatcgttcac
cgtaaaggcgctacaccagctggtaaggatgtgttggggatcattcccggttccatgacg
gctcctggttttattgtgaaaggtaaaggagaaacagcttctgtttcctctgcttcacat
ggagccggtagaaaaatgagccggagcaaagcattaaattccattacgcagaaggaactg
aaagatcagttgcaacgacatggagtgaaattgctgggtggcggattggatgaggccccc
aatgcctataaggatatagaagtggtaatgaaaagccaatcggcgttggtagatgttgta
ggtaagttctccccaaaaattgttagaatggatggaacagcgcctaagaaatggcaaaaa
actaattccatggacggtgagtaa
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