Candidatus Nitrosopumilus koreensis: NKOR_00065
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Entry
NKOR_00065 CDS
T02304
Name
(GenBank) apurinic endonuclease Apn1
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
nkr
Candidatus Nitrosopumilus koreensis
Pathway
nkr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nkr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NKOR_00065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nkr03400
]
NKOR_00065
Enzymes [BR:
nkr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
NKOR_00065
DNA repair and recombination proteins [BR:
nkr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
NKOR_00065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
AFS79939
UniProt:
K0B3C6
LinkDB
All DBs
Position
complement(17044..17883)
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AA seq
279 aa
AA seq
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MQIGCHVSISGSIDKAVDNAIERECSAFQIFTRNPRGWHAKALTKKDITKFKSKLKESKI
DRFATCAHMPYLPNLATPKDDGFEKSVKTLIDEVERCAQLGIPYLVTHLGSHLGTGEEAG
IKRLVKGLTKAGQTKNDVMILLENTAGQKNSVGSNFKQLGEIFKQLKPSKKFGVCLDSCH
AFVSGYDLRTEDAVKKTFAEFDKYIGMDNLKILHLNDAKGEIGCNLDRHYHLGLGGIGEK
GISAIVKFANKKKIPIVLETPIDDDRDDFENIRKAKEFA
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgcagattggttgtcatgtatcaatttcaggttccattgacaaagcagttgacaacgca
attgaaagagaatgttctgcatttcaaatatttactagaaatccaagaggatggcatgca
aaagcgctcactaaaaaagacattaccaaattcaaatcaaaactaaaagaaagtaagatt
gacagatttgcaacttgtgcccatatgccatatcttccaaatttagcaactccaaaagat
gatggctttgaaaaatcagtaaaaactctgatagatgaagttgaacgatgtgcacaatta
ggaattccatatcttgtaactcatcttggaagtcatttgggcacaggagaagaagcagga
ataaagagactggttaaaggattaaccaaagctgggcaaacaaaaaatgatgtaatgatt
ctactagagaacaccgcaggacaaaaaaattctgttggttcaaactttaaacaattagga
gaaatattcaaacaactaaagccttcaaaaaaatttggcgtatgtttagattcatgtcac
gcgttcgtttcaggatatgatttgagaactgaagatgcagtgaaaaagacttttgcagaa
tttgataaatacataggaatggataatttgaaaattcttcatctaaatgatgcaaaaggt
gagattggttgcaacctagatagacactatcatttaggattgggtggaattggagagaaa
ggaatttctgccattgtaaagtttgcaaacaagaaaaaaatacccatagttttagaaact
ccaattgatgatgatagagatgactttgagaacattagaaaggcaaaagaatttgcgtag
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