KEGG   Candidatus Nitrosopumilus koreensis: NKOR_05580
Entry
NKOR_05580        CDS       T02304                                 
Name
(GenBank) transcription factor TFIIB cyclin-related protein
  KO
K03124  transcription initiation factor TFIIB
Organism
nkr  Candidatus Nitrosopumilus koreensis
Pathway
nkr03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:nkr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    NKOR_05580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nkr03021]
    NKOR_05580
Transcription machinery [BR:nkr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     NKOR_05580
 Prokaryotic type
  Archaeal type
    TFB
     NKOR_05580
SSDB
Motif
Pfam: TFIIB Zn_Ribbon_TF Cyclin_N Zn_ribbon_tTFIIB BRF2-like_C_cyclin_rpt Zn_Ribbon_Prim Ribosomal_S27e Lar_restr_allev DUF2387 Zn_ribbon_5
Other DBs
NCBI-ProteinID: AFS81002
UniProt: K0B783
LinkDB
Position
936150..937061
AA seq 303 aa
MLRNTMITGSKCPACGDKKMITDENTGELFCGKCGFVVSDKIADTGAEWRSFSNDEGNKA
RTGAGTSLTMHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSSADRNLR
QALNEMDKLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPR
TLDDVAKGINIRRKDVARCYRLIFRELELKMPVVDPVKGVSRIASIAELSEKSKRKAIAI
LNEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIRNRCAGLRKM
INN
NT seq 912 nt   +upstreamnt  +downstreamnt
atgcttagaaatacaatgattacaggttcaaaatgtccagcctgcggcgataaaaaaatg
atcaccgatgaaaatacaggggaattgttttgtggaaagtgtggatttgttgtttcagat
aagattgcagatacaggtgcagagtggcgttctttttcaaatgatgaaggtaacaaagca
agaacaggtgcaggaacttcccttacaatgcatgatatggggctatcaacggtaatagga
gctgcaaacaaagactctacaggaaaaccattatctgcaagtgtaaaaagttcgattgaa
aggctaagaacatgggacagtagaagtcaagctcattcatcagcagacaggaatctaaga
caggcactaaatgagatggacaaactaaaagacaaattagcattaacagatgcagttatt
gaaaaagcagcctacatttacagaaaggcaatggagaaaaaacttgtcagaggacgttca
attcaaggattagtagcagcatgcctttatgcatcatgtagaaatactgaaaccccaaga
acgctggatgacgtagcaaaaggaatcaacattagaagaaaagatgttgcaagatgttat
agattgatttttagagaattggaattaaaaatgccagtagttgatcctgttaaaggagta
tctagaattgcaagtatcgcagagctaagtgagaaaagtaaacgtaaagcaattgccatt
ttaaatgaagcaaaaaagatgggagtagttgcaggcaaagatccaatggggatagcagct
gctgcattatatcttgcatgtattagtactggagaagtaaaatcacaaaaagacatatcc
atagcatcaggagtaacagaagttacaatcagaaacagatgtgcaggattgagaaaaatg
attaacaattaa

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