Candidatus Nitrosopumilus koreensis: NKOR_06755
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Entry
NKOR_06755 CDS
T02304
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nkr
Candidatus Nitrosopumilus koreensis
Pathway
nkr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nkr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NKOR_06755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nkr03019
]
NKOR_06755
03009 Ribosome biogenesis [BR:
nkr03009
]
NKOR_06755
Enzymes [BR:
nkr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NKOR_06755
Messenger RNA biogenesis [BR:
nkr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NKOR_06755
Ribosome biogenesis [BR:
nkr03009
]
Prokaryotic type
rRNA helicases
NKOR_06755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFS81224
UniProt:
K0B6V3
LinkDB
All DBs
Position
1126249..1127565
Genome browser
AA seq
438 aa
AA seq
DB search
MTKFQELGLKEDILKGINDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSM
LQKIQPKNGIQGLIMAPTRELAMQITDEIKKFGKYTGIRVATVYGGQGMGVQFDALERGV
EIVVATPGRLIDHLKRGSIELRDISHIVLDEADTMLDMGFIDDIQFILDLAPEDRVMSLF
SATMPTEILRLSEEYLKNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIKPVKGQ
SIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVATDVASR
GIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAVTFVSYSSVGDWNLIKRQIKVP
ITDLNKEMGIEIAIPDPLKRQMPSRRYGGQSRSNYSRGGRSGGYGRSGGRRDSRDERGGR
KRYNDRDNRNSYGGRSRW
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttcaagaattaggattaaaagaagatatactaaaagggattaacgatctt
ggatttgaggaagcatttccaattcaagaagcagtgattccagtattacttacaggaaga
gatgttgtaggacaagcacatacaggttctggtaagactgcagctttttcattatcaatg
ttgcaaaaaattcaaccaaaaaatggcattcaagggttgattatggcacccacaagagaa
cttgcaatgcaaattacagatgagattaaaaaatttggaaaatatacaggaattagagta
gctacagtttatggcggacaaggaatgggagtccaatttgatgcccttgaaagaggagta
gagattgtcgtagcaacaccaggaaggttaattgatcatctcaaaagaggttcaatagaa
ctcagagacatatcccacatagttcttgatgaggcagatacaatgttagatatgggattt
attgatgatattcaatttattttagatcttgcacctgaagacagagttatgtcattgttt
tcagcaacaatgccaacagagattctcagattatctgaagaatatttgaaaaacccaaag
caatttttgttggatgcagatgatcttagcggagagggtattgaccaatcatatttagtt
atcaaagacagagacaaattcaagtatctaattgactttatcaaaccagtaaaggggcaa
tccattgtattttgttcaaccaaatacagaacaagagatgtggccaaattcttacaccaa
gaaaaatttgatgccgtagcaatagaaggagacatgtcccagcacagaagagagcaatcc
atgggaaaattccgtagcggtaaagcagacattctcgtagcaaccgatgttgcatcaaga
ggaatagatgttccaagagttgaattagtgattaattatgatgttccaaaccaagaaatg
gcatactttcacagaattggaagaactgcaagggcaggtgcaaaaggaaaagcagtgaca
tttgtttcatattcttctgtcggagattggaatctaatcaaacgtcaaatcaaagttcca
atcacagatttgaacaaagaaatgggaattgaaattgctattccagatcctctaaaaaga
caaatgccatcaagaaggtatgggggtcaatcaagatcaaactattccagaggaggtcgt
tctggaggatatggtagatcaggaggtagacgagactctagagacgagagaggcggaaga
aaaagatacaatgatagagacaaccgaaatagttacggtggtcgcagtagatggtaa
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