Candidatus Nitrosopumilus koreensis: NKOR_07565
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Entry
NKOR_07565 CDS
T02304
Name
(GenBank) transcription factor TFIIB cyclin-related protein
KO
K03124
transcription initiation factor TFIIB
Organism
nkr
Candidatus Nitrosopumilus koreensis
Pathway
nkr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nkr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NKOR_07565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nkr03021
]
NKOR_07565
Transcription machinery [BR:
nkr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
NKOR_07565
Prokaryotic type
Archaeal type
TFB
NKOR_07565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
HTH_AsnC-type
Cyclin_N
HTH_11
HTH_3
HTH_Crp_2
Zn_Ribbon_1
HTH_24
RB_B
Zn_ribbon_tTFIIB
Motif
Other DBs
NCBI-ProteinID:
AFS81374
UniProt:
K0B7B9
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All DBs
Position
complement(1259743..1260612)
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AA seq
289 aa
AA seq
DB search
MQTDNVTGEQFCGKCGYVVSEKSNESGPEWRAFQTDSGANPARTGAPSSLLIHDMGLSTV
INPINKDATGKPLSTSMKSTIERLRTWDSRSQAHEPQDRNLRQALGELTRIKDKIALSTN
VLEKAAYLYRKALEKKLVRGRSISAMIAASIYAACRDTETPRTLKDVADAANVKRKDIAR
CYRLLHHELELKMPVVNSIQCISRISSKLELSEKIKRHAIKVLQEAQNNKESAGKDPMGL
AATALYIACLKHGGSITQRDLAEAAGVTEVTIRNRYKGLKKQPNFKLES
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcagactgataatgttactggagaacagttttgtggtaaatgtggatatgttgtttct
gaaaaatcaaatgagtcaggtccagaatggagggcatttcagacagatagtggggcaaat
cccgcaagaactggagcaccctcatcacttttgatacatgatatggggctatctactgta
attaatccaataaacaaggatgctactggcaagccactatcaacatctatgaaaagcacc
attgaacgattacggacttgggatagcagaagccaagctcatgaacctcaagatagaaat
ctcagacaagcactcggtgaattaactagaataaaagacaagattgcactttctacaaat
gttcttgaaaaagctgcatatttgtatagaaaagcattagagaaaaaactagttcgtgga
agatctatttctgcaatgattgctgcatcaatatatgcagcatgcagagatactgaaact
cctagaactctaaaagatgttgcagatgctgcaaatgttaaacgtaaagatattgctcga
tgttacagattattgcatcatgaattggaactcaagatgcctgttgtaaattcaattcaa
tgcatatcgagaatctcaagcaaattggaactatctgaaaaaatcaaacgacatgcaatc
aaagtacttcaagaagctcagaataacaaagaatctgctggaaaagaccctatggggctt
gctgcaactgcattatacattgcttgtttgaaacatggtggctctattactcaacgggat
cttgccgaggcggcaggagtaacagaagtgaccataagaaataggtacaaaggattaaaa
aaacagccaaatttcaagttagaatcttaa
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