Neisseria lactamica: NLA_1560
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Entry
NLA_1560 CDS
T01368
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nla
Neisseria lactamica
Pathway
nla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLA_1560 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nla03019
]
NLA_1560 (rne)
03009 Ribosome biogenesis [BR:
nla03009
]
NLA_1560 (rne)
Enzymes [BR:
nla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NLA_1560 (rne)
Messenger RNA biogenesis [BR:
nla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NLA_1560 (rne)
Ribosome biogenesis [BR:
nla03009
]
Prokaryotic type
rRNA processing factors
NLA_1560 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Motif
Other DBs
NCBI-ProteinID:
CBN86398
UniProt:
E4ZAD7
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All DBs
Position
complement(155951..158707)
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AA seq
918 aa
AA seq
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MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY
GTDRHGFLPFKEVSRSYFLGYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAQLDIPNGMSIIARTAGIGRSAEELEW
DLNYLKQLWQAIEEAGEAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVAE
FMSYVMPGNAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSID
VNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVL
RDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHV
LRMVQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHY
EINRIRTDDVEEDGEPSYKRVAEPEEDESAKPFGSERAKAARPEPAVKGVRHTSPAPTAA
PEKKTSWWDSFKAWLKRIFGGTSETPAAAETSEKRISGGNRNAPRRTGSRRQNPRRGNRH
DGGRAEVRETADFKGKAADNQAAEHETRNAKDNRRSRNRQNERNAAAEAGNPEVRTLAAA
TPSESETRPAVQAQEGKRRRNNNRNERNREQEENRAEETLSEAAGNVAEEGVQTAGADAP
KGNERRQRERNNQRDRRERNNQRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHV
FGENDANAPITVSIAGPVAERDVPTASPAVSNGDAPVYDAAEKIRQAVAAILPEGATPKA
EAQEMPSETAIRAVKQAQETVQTGGLVLIETDPAALKAWAAQPEVQTGRGIRRSEQPKPS
EAATVPAEEMIQVETRQG
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttattcaacgcaacgcaggccgaagagctgcgcgttgccatcgtcgac
ggacaaaacctgctggatttggacatcgaaacgctgggcaaagaacagcgcaaaggcaat
atctacaaaggcatcattacccgcatcgagccgtcgctggaagcgtgtttcgtcgattac
ggaaccgaccgccacggctttttgccgtttaaagaagtatcgcgttcgtatttcctcggc
tacgaaggcgggcgcgcgcgcattcaggacgtactcaaagaaggtatggaagtcatcgtc
caagtcgaaaaagacgagcgcggcaacaaaggcgcggcactgaccaccttcatcagcctc
gccggacgctatctcgtactgatgcccaacaacccgcgcggcggcggcgtatcccgccgt
atcgaaggcgaagagcgtcaagaactcaaagccgctatggcgcaactcgacattccgaac
gggatgagtatcatcgcgcgtaccgcaggcatcggccgcagcgcggaagagttggaatgg
gacttgaactacctcaaacaactctggcaggcgattgaagaagccggcgaagcgcatcac
gacccctacctgctctttatggaaagctcgctgctcatccgagccatccgcgactacttc
cgtcccgacatcggcgaaattctggtggacaaccaagaagtttacgaccaagttgccgag
tttatgagctacgttatgccgggcaacgcaggccgtctgaaactctacgaagaccatacg
ccgctgttctcccgcttccaaatcgaacaccagatcgaaagcgcgttttcgcgcagcgtc
agcctgccttccggcggcgcgatcgtcatcgaccataccgaagccctggtttctatcgat
gtcaactccgcccgcgccacacgcggcgcggacatcgaagacaccgcgttcaaaaccaat
atggaagccgccgaagaagtcgcccgacaaatgcgcctgcgcgacttgggcggtttggtc
gtcatcgacttcatcgatatggaaaaccccaaacaccagcgcgatgtggaaaacgtcctg
cgcgacgcgctcaaaaaagaccgcgcccgcgtgcaaatgggcaaactttcgcgtttcggc
cttttggaattgagccgccaacgcctgaaacccgccttgggcgaaagcagccacgtcgcc
tgtccgcgctgcgccggcaccggcgtgattcggggcatcgaatccaccgccctgcacgtt
ttgcgtatggttcaggaagaagcgatgaaagacaacaccggcgaagtgcgcgcccaagtg
cccgtcgatgtcgccaccttcctgctgaacgaaaaacgcgccgagctgtttgcgatggaa
gagcgtttggatgtcaacgtcgtcctgattccgaacatccacctcgaaaatccgcactac
gaaatcaaccgcatccgcaccgacgacgtagaagaagacggcgaaccgagctacaagcgc
gtcgccgagccggaagaagacgaatccgccaaaccgttcggcagcgaaagggccaaagcc
gcccgtcccgaacccgccgtcaaaggcgtgcgccacaccagccccgccccgactgccgcc
cccgagaaaaaaacctcttggtgggacagcttcaaggcttggttgaaacgcattttcggc
ggcacatccgaaaccccggccgctgccgaaacctccgaaaaacgcatttccggcggcaac
cgcaacgcgccgcgccgcaccggcagccgccgccaaaacccgcgccgaggcaacaggcac
gacggcggcagggcggaagtgcgcgaaacggcggatttcaaaggcaaagcggcagacaat
caggcggcggaacacgaaacccgcaacgccaaagacaaccgccgcagccgcaatcgccaa
aacgaacgcaacgccgcagcggaagccggaaaccccgaagtccgaacacttgccgccgca
acgccgtctgaaagcgaaacccgcccggccgtgcaggcgcaagaaggcaaacgccgccgc
aacaacaaccgcaacgaacgcaaccgcgaacaggaggaaaaccgtgcggaagaaaccttg
tccgaagcagcgggcaacgtagcggaagagggcgtgcaaaccgccggtgccgatgcgccg
aaaggcaacgaacgccgccaacgcgagcgcaacaaccaacgcgaccgccgcgagcgcaac
aatcagcgcgaccgccgtcaaaacggcaaaaaacgcaatattccgtctgccgccaaaatc
gagcagtacctgaatattcacgataccgccgacaaagtccgttccgccgccgcgcacgtt
ttcggcgaaaacgatgcaaatgctccgattaccgtcagcattgccggaccggttgcagaa
agggacgttccgacagcatctcccgccgtttcaaacggcgatgcaccggtttatgatgcg
gcagaaaaaatccgtcaggccgttgccgccatccttcccgaaggcgcgacaccgaaagcc
gaagcacaggaaatgccgtctgaaaccgcaatccgcgcggtgaaacaggcacaggaaacc
gtacaaaccggcggactcgtcctgatcgaaaccgaccctgccgcattgaaggcatgggcg
gcacaacccgaagtccaaaccggacgcggcatacgtcgttccgaacagcccaagccgtct
gaagccgcaaccgtccctgccgaagaaatgatccaagtcgaaacccggcaaggctga
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