Nocardioides lacus: P5P86_00835
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Entry
P5P86_00835 CDS
T11404
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
nlb Nocardioides lacus
Pathway
nlb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nlb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
P5P86_00835 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nlb03400
]
P5P86_00835 (recD)
Enzymes [BR:
nlb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
P5P86_00835 (recD)
DNA repair and recombination proteins [BR:
nlb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
P5P86_00835 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
UvrD-helicase
Viral_helicase1
NAT10_TcmA_helicase
AAA_22
RecD_N
SH3_13
TraI_hel_assoc_N
PhoH
Mg_chelatase
AAA_5
AAA_25
AAA
AAA_29
AAA_7
TrwB_AAD_bind
nSTAND3
SLFN-g3_helicase
CbiA
AAA_28
Motif
Other DBs
NCBI-ProteinID:
WGL52388
LinkDB
All DBs
Position
complement(186929..188674)
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AA seq
581 aa
AA seq
DB search
MIERWTDETTDPADARFARAASGVLARFNAAGILTAADVHVAARTAALVGGVDEETQLAV
ALAVRAARAGSVCVDLDDLTRTEPDLPWPPPGWLARVGASRLAGASVLRVEGDLLYLDRY
WREEGQVRDDLLVRETLAPPPTGSGALAERAERLFPGVGYAEQRAAALSAVGQWTTVLTG
GPGTGKTTTVAGLLALIAAESPVPLRIALTAPTGKAAARLQEAVTAAQQERRFSDDDRAR
LAGLTASTMHRLLGWRPGSSTRFAHHRGNRLPHDVIVVDETSMVSLTMMARLLEAVRPDT
RLILVGDPDQLASVEAGAVLADLATGLAERGSGAVVGLRTTHRFGEGIGDLAQALRDGDA
DRVLALLEDGSGRLRRIDPQDEAAMSALRGRLSDHAAELRRLSLAGDAAGAVATADDHRL
LCAHRDGPWGALHWNRQIDRALADRAGTWLGEWYAGRPILVTTNDYSVGLFNGDTGVAVV
AGDGALRVHIAGGRTYAPSRLGDVETLHAMTVHKSQGSQAREVSVLLPPADSPLLTRELF
YTAVTRAQERVTVIGSRESVAAAVTRRAQRASGLRRRLSEA
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcgctggaccgacgagacgaccgatccggccgacgcccgcttcgcccgtgct
gcgagcggtgtcctggcacggttcaacgctgccgggatcctcaccgccgccgacgtgcac
gtggcagcgcgcaccgcggccctggtgggcggtgtcgacgaggagacccagctggccgtg
gccctcgccgtacgggcggcgcgggcgggctccgtctgcgtcgatctcgacgacctcacc
cgcaccgagcccgatctgccgtggccgccgcccgggtggctggcccgggtcggggcgagc
cggctcgcgggcgcgtcggtcctccgcgtcgagggtgatctgctctacctggatcgctac
tggcgcgaggagggtcaggtccgcgacgacctcctcgtccgggagacgctggcgccaccg
ccgacggggtccggcgccctcgccgagcgggcggagcggctcttcccgggcgtggggtac
gccgagcagcgagcggccgccctgtccgcggtcggccagtggaccaccgtcctgaccggc
ggtcccgggaccggcaagaccaccaccgtggccggcctcctggccctgatcgccgccgag
tcgcccgtcccgctgcggatcgcgttgaccgcgcccaccggcaaggcggccgcccgcttg
caggaggcggtcaccgcggcccagcaggagcggcgcttcagcgacgacgaccgcgctcgt
ctggccggcctgaccgcctcgacgatgcaccggctgctgggctggcgaccgggctcctcc
acccgcttcgcgcaccaccgcggcaacaggctgccgcacgacgtgatcgtcgtggacgag
acgtcgatggtctccttgaccatgatggcccgcctgctcgaggcggtccgtcccgacacc
cggctcatcctggtcggcgatcccgaccagctggcctcggtcgaggcgggagccgtcctc
gccgacctcgccacgggcctcgccgagcgcggctccggtgcggtcgtcgggctgcgcacg
acccaccggttcggcgagggcatcggcgacctggcccaggcgctgcgcgacggcgacgcc
gaccgcgtgctcgcgctcctcgaggacgggtccggacggctgcgccggatcgatccgcag
gacgaggcggcgatgagcgcgctacgtggccggctgagcgatcatgcagccgagctgcgc
cgtctctcccttgccggcgacgcggccggtgccgtggcgacagccgacgaccaccggctc
ctgtgcgcccaccgcgacggcccgtggggtgccctgcactggaaccgtcagatcgaccgg
gcgctcgccgaccgggccggcacctggctgggcgagtggtacgcgggacggccgatcctg
gtgacgaccaacgactacagcgtcggcctgttcaacggcgacacaggcgttgcggtggtg
gctggcgacggcgcgctccgggtgcacatcgccggtggccgtacctatgcgccctcgcgg
ctcggagacgtcgagacacttcatgcgatgacggtgcacaagagtcagggcagccaggcc
cgggaggtcagcgtgctgctgcctccggccgactcgccgctgctgacccgggagctcttc
tacaccgccgtcacccgtgcccaggagcgggtgaccgtgatcggcagccgggagtccgtg
gccgccgcggtgacccgccgcgcccagcgggcgagcggtctgcgtcgccgactgagcgag
gcgtga
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