Nocardioides lacus: P5P86_04795
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Entry
P5P86_04795 CDS
T11404
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nlb Nocardioides lacus
Brite
KEGG Orthology (KO) [BR:
nlb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nlb03016
]
P5P86_04795
Enzymes [BR:
nlb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
P5P86_04795
Transfer RNA biogenesis [BR:
nlb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
P5P86_04795
Prokaryotic type
tRNA splicing ligases
P5P86_04795
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Other DBs
NCBI-ProteinID:
WGL53142
LinkDB
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Position
complement(1032326..1033507)
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AA seq
393 aa
AA seq
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MQKITPRLLSWASILEDSTREQAVTTARMPFIHPHVALMPDAHLGLGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVRTPYDVSDLPADRRALRTAIERAVPLSAGAANSRISRQHTEQRL
EVLAREADEAGFDPGHYAKRWELQLGTLGSGNHFIEVTADESGGVWLFLHSGSRGVGNKI
AQHHIAIAAELCRKWHIQLPHRDLAYLAEDTVEFDAYIAQMRWAQHYALLNREEMMDRVV
RQFAEWVGAGDASEVQRVEEINCHHNYTEQERHFGRTVWLSRKGAINAESGRPGLIPGSM
GTASYVVSGLGNAVALNSAPHGAGRTYSRSAARRQFSRDDLRTAMAGIEYRDTDAFIDEI
PAAYKDIDQVMADAVDLVEIRHTLHQLVNVKGD
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaccccgaggctcctgagctgggcctcgatcctcgaggacagcacccgc
gagcaggcggtcaccacggcccgcatgccgttcatccatccgcacgtggccctgatgccc
gacgcccacctggggctcggcgcgacggtcgggtcggtcatcccgaccctgggcgcgatc
atccccgccgctgtcggcgtggacatcggctgcggcatgatcgctgtccgcaccccgtac
gacgtcagcgacctgcccgccgaccggcgggcgctgcgcacggcgatcgagcgggccgtg
ccgctgagcgccggcgccgcgaacagccggatcagccggcagcacaccgagcagcgcctc
gaggtgctggcccgggaggcggacgaggccgggttcgacccgggccactacgccaagcgg
tgggagctccagctcgggacgctcgggtcggggaaccacttcatcgaggtcaccgccgac
gagtcgggcggggtctggctgttcctgcactcgggctcgcgcggcgtgggcaacaagatc
gcccagcaccacatcgccatcgccgccgagctgtgccgcaagtggcacatccagcttccc
catcgcgacctcgcctacctggccgaggacaccgtcgagttcgacgcctacatcgcccag
atgcggtgggcgcagcactacgcgctgctcaaccgcgaggagatgatggaccgggtggtg
cggcagttcgcggagtgggtcggcgccggtgacgcaagcgaggtgcagcgggtggaggag
atcaactgccaccacaactacaccgagcaggagcgtcacttcggccggacggtgtggctc
tcccgcaagggcgccatcaacgccgagtcggggcggcccgggctgatccccggcagcatg
ggaacggcctcctacgtcgtcagcggactcggcaacgcggtcgcgctcaactccgcgccg
cacggcgccggtcggacgtactcgcgctcggccgcacgacggcagttctcccgggacgac
ctgcgcacggcgatggccggcatcgagtaccgcgacaccgacgcgttcatcgacgagatc
cccgcggcgtacaaggacatcgaccaggtgatggccgacgccgtcgacctggtcgagatc
cggcacacgctgcaccagctggtgaacgtgaagggtgactga
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