Nocardioides lacus: P5P86_08205
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Entry
P5P86_08205 CDS
T11404
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nlb Nocardioides lacus
Pathway
nlb03030
DNA replication
nlb03430
Mismatch repair
nlb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nlb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P5P86_08205
03430 Mismatch repair
P5P86_08205
03440 Homologous recombination
P5P86_08205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nlb03032
]
P5P86_08205
03400 DNA repair and recombination proteins [BR:
nlb03400
]
P5P86_08205
Enzymes [BR:
nlb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
P5P86_08205
DNA replication proteins [BR:
nlb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
P5P86_08205
DNA repair and recombination proteins [BR:
nlb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
P5P86_08205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
UVR
DEDDh_C
XdhC_C
TMV_coat
ADH_Fe_C
Motif
Other DBs
NCBI-ProteinID:
WGL53798
LinkDB
All DBs
Position
complement(1743310..1745103)
Genome browser
AA seq
597 aa
AA seq
DB search
MSSTAAATARSRWESQRSFDELGRQLRDVTFCVVDLETTGGSAEAGSMITEIGAVKVRAG
EILGEFQTLVNPHSAIPPFIAVLTGISDTMVADAPGIESALPAFLEFAAGCVLVAHNAPF
DVGFLKHFAARQQRPWPAFEVVDTAKLARRVITRDDAPNCKLSSLAQVFRSGTTPNHRAL
SDARATVDVLHGLMERLGGLGVHTLEELQTFSARVSTAQRKKRHLAESLPHAPGVYLFRD
DRERVLYVGTSRDLRTRVRSYFTASETRSRIGEMVGLAATVTGIECATTLEAQIRELRLI
AEHKPRYNRRSRFPERMHFVKLTREPWPRLSLVKRVLDDEADYLGPFSSKKVAEKALQAL
HDTFPVRQCSDRLARRASKSPCVLAEMGRCLSPCDGSADEEAYAAVVRQLRDTLLRRPDE
VITSISERMQALAAAERFEEAGVHRDRLAAFLRAAARTQRLSALARCGQIVAGRRRDDGR
WEVHVVRRGRLAAAGTLPPGGDAHDYVRQLCASAETVLPAPGPVPAASAEESELVLKWLE
SPGVRLIDVDGEWTCPVAGATRHLAVHDAVEESRRTLVPFDERRELSTVHQGVPLAR
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaccgcagcagcgacagcgcgatcgcgttgggagtcccagcgcagcttcgac
gagctggggcgccagctgcgcgacgtgacgttctgcgtggtcgacctggagaccaccggc
ggctcggccgaggccgggtcgatgatcaccgagatcggcgcggtcaaggtccgtgccggc
gagatcctgggcgagttccagacactggtcaacccgcacagcgcgatcccgccgttcatc
gcggtgctcaccggcatcagcgacaccatggtggccgatgcgccagggatcgagtcggcg
ctgccggcgttcctggagttcgccgcggggtgcgtgctggtggctcacaacgcacccttc
gacgtcggcttcctcaagcacttcgccgcccgccagcagcggccctggccggccttcgag
gtggtcgacaccgcgaagctggcgcgccgggtgatcacccgcgacgacgcgcccaactgc
aagctgtcctcgctcgcgcaggtcttccgctccggcaccacgccgaaccaccgcgcgctc
tccgacgcgcgcgcgaccgtcgacgtgctgcacggcctgatggagcggctcggcggcctc
ggggtgcacaccctggaggagctccagacgttctccgcacgggtctccaccgcgcagcgc
aagaagcgccacctcgccgagtcgctgccgcacgcaccaggggtctacctgttccgcgac
gaccgcgagcgggtcctctacgtcggcaccagccgcgatctgcgcactcgggtgcgctcc
tacttcaccgcctccgagacccgctcccggatcggcgagatggtcggcctggccgccacc
gtcaccgggatcgagtgcgccaccaccttggaggcacagatccgcgagctgcgactcatc
gccgagcacaagccgcgctacaaccgacgctcgcgcttcccggagaggatgcacttcgtc
aagctcacccgggagccgtggccgcggctgtccctggtcaagcgcgtgctcgacgacgag
gccgactacctggggcccttctcgtcgaagaaggtcgccgagaaggcgctccaggcgctg
cacgacaccttcccggtccgccagtgctcggaccggctggcgcgcagggcgtcgaagtcc
ccctgcgtgctcgccgagatggggcgttgcctctccccctgcgacggcagcgccgacgag
gaggcctacgccgcggtggtcaggcagctgcgcgacaccctgctgcgccgacccgacgag
gtgatcacctcgatcagtgagcggatgcaggcactggcggcagcggagcggttcgaggag
gccggggtgcaccgcgaccggctggcggcgttcctgcgggccgcggcgcgcacccaacgg
ctctcggcgctggcccggtgcggccagatcgtcgccggccgccgccgcgacgacggacgc
tgggaggtgcacgtggtccgacgcggccggctcgccgccgcgggaacactgccaccgggc
ggcgatgcccacgattacgtccgccagctgtgcgcctcggccgagaccgtgctgcccgcc
cccggaccggtccccgcggcgagcgccgaggagagcgagctggtgctcaagtggctggag
tcgcccggggtccggctgatcgacgtcgacggggagtggacctgccctgtcgccggcgcc
acccgacacctcgcggtgcacgatgcggtcgaggagtcccgccgtacgctcgtgcccttc
gacgagcgtcgtgagctgtcgacggtccatcagggcgtgccgctggcgcggtaa
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