Nocardioides lacus: P5P86_08585
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Entry
P5P86_08585 CDS
T11404
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nlb Nocardioides lacus
Pathway
nlb03030
DNA replication
nlb03430
Mismatch repair
nlb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nlb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P5P86_08585 (dnaE)
03430 Mismatch repair
P5P86_08585 (dnaE)
03440 Homologous recombination
P5P86_08585 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nlb03032
]
P5P86_08585 (dnaE)
03400 DNA repair and recombination proteins [BR:
nlb03400
]
P5P86_08585 (dnaE)
Enzymes [BR:
nlb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
P5P86_08585 (dnaE)
DNA replication proteins [BR:
nlb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
P5P86_08585 (dnaE)
DNA repair and recombination proteins [BR:
nlb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
P5P86_08585 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
WGL53872
LinkDB
All DBs
Position
1822173..1825739
Genome browser
AA seq
1188 aa
AA seq
DB search
MSSDSFVHLHVHTEYSMLDGASLLDGLFKRTSDLQMPAIAMTDHGNLHGAYDFYSKAKKY
GVKPIIGIEAYLTPGTPRGERKKIRWGKGDQSEEGGDDVSGGGAFTHMTMWAESTEGMHN
LFRLSSRASLEGYYFKPRMDKELLQTYSKGLIVSTGCPSGAIQTRLRLGQWDEAVREAGE
LQDIFGKDNVFLELMDHGISIEKRVRDDLLRLGREMNIKPIATNDSHYNNPEDAAAQEAL
LCVNSGSRLSEPTYAQGGKRFAFEGTGYYIKSAAEMRELWGSQDLMEACDNTLLIAERCE
VEFTESTGGYMARADIPAGETEESWFRKEVWRGIELRYPGDRLTQEVKDRVEMELAIISQ
KGYCGYYLVVADFIQWSKNNGIRVGPGRGSGAGSIAAYALKITDLCPLEHGLFFERFLNP
ERPSMPDFDIDFDDHRRGEVIQYVTEKYGSERVAQIATFGRIKAKQAIKDAARILDHGFA
IGDRITKALPPDVMGKGVPLKELFNPEHKRYSEGGEFRALHDADPEVRRIYEVALGLEGQ
IRQTGVHAAGVIMSSEPLLDVVPLMDPKQDGAIITQFEYPMCESLGLVKMDFLGLSNLHT
LEDAVANIKANRGEDLVLEDLPFDDRATYELMGRGDTLGVFQLDGGGMRALLRSMLPDQF
ADITAVSALYRPGPMGADSHNKYAHRKNGREPIEPIHPALAEALEPVLGETYGLIVYQEQ
VMAIAQVLAGFSLGAADNMRRAMGKKKKEELDKQYAGFEAGMLERGYPKDAVKTLWEILV
PFADYAFNKSHSAAYGVVTYWTAYLKANYPTEYMAALLTSVKNDKDKMAIYLGECRRMKI
NVLPPDVNESAHNFTAVGNDIRFGLTAVRNVGWNVVDGIVSAREEKGRYEDFNDFLAKVP
ATACNKRVIESLIKAGAFDDMKHRRRALVAVHETAVDQFVDIKRNEAIGQDSLFGGLDDD
LGGSFGVSVTIPDIDEWDKMTLLGHEREMLGLYVSDHPLFGLEHVLANGSDCTIGQLLGD
ETRPHNSTITICGLVTGVNRRITKKGDPWATVTIEDLEGAIEVLFFPSSYVLAAPHLIED
AIIRVKGQLSRDKEQPEIRGQEVSAPDLTDGPSGPVVVSLPATRCTPPVVAQLRDVLAAH
PGMTEVRLRLLTRESTRVLRLDDRLRVTPSSALFADLKHLLGPGCLTS
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcgactcgttcgtccacctccacgtccacaccgagtactcgatgctggacggg
gcctccctgctcgacggtctcttcaagcgcaccagcgatctgcagatgccggccatcgcg
atgaccgaccacggcaacctgcacggcgcctacgacttctactccaaggccaagaagtac
ggcgtgaagccgatcatcggcatcgaggcctacctcacccccggcaccccgcgcggcgag
cgcaagaagatccgctggggcaagggcgaccagtccgaggagggcggcgacgacgtctcc
ggcggcggagccttcacccacatgacgatgtgggccgagtcgaccgagggcatgcacaac
ctgttccggctgtcctcgagggcgagcctggagggctactacttcaagcctcggatggac
aaggagctgctgcagacctacagcaagggcctgatcgtctcgaccggctgccccagcggc
gccatccagacccggctccggttgggccagtgggacgaggccgtgcgcgaggccggcgag
ctgcaggacatcttcggcaaggacaacgtcttcctcgagctgatggatcacggcatctcg
atcgagaagcgggtccgcgacgacctgctccgcctcggccgcgagatgaacatcaagccg
atcgccaccaacgactcgcactacaacaaccccgaggacgccgcggcccaggaagcgctg
ctgtgcgtcaactccggcagccggctctccgagccgacctacgcccagggcgggaagcgg
ttcgccttcgagggcaccggctactacatcaagtcggcggcggagatgcgtgagctgtgg
ggctcccaggacctgatggaggcctgcgacaacaccctgctcatcgcggagcggtgcgag
gtcgagttcaccgagtccaccggtggctacatggcgcgcgccgacatcccggcgggggag
accgaggagagctggttccgcaaggaggtatggcgcggcatcgagctgcgctaccccggc
gaccggctcacccaggaggtcaaggaccgggtcgagatggagctcgcgatcatctcccag
aagggctactgcggttactacctggtggtcgcggacttcatccagtggtcgaagaacaac
ggcatccgggtcggcccgggccgtggctccggcgctgggtccatcgccgcctacgcgctg
aagatcaccgacctgtgtccgctggagcacggtctgttcttcgagcgtttcctcaacccc
gagcgtccctcgatgccggacttcgacatcgacttcgacgaccaccgccgaggcgaggtc
atccagtacgtcaccgagaagtacggctccgagcgcgtcgcgcagatcgccaccttcggc
cggatcaaggccaagcaggcgatcaaggacgccgcccgcatcctcgaccacggcttcgcc
atcggcgaccggatcaccaaggcgctcccgccggacgtgatgggcaagggcgttccgctc
aaggagctgttcaaccccgagcacaagcgctacagcgagggcggggagttccgggcgctg
cacgacgccgaccccgaggtcaggcgcatctacgaggtggcgctcggcctcgagggtcag
atccgccagacgggcgtgcacgccgccggcgtgatcatgtccagcgagccactgctcgac
gtggtccccctgatggacccgaagcaggacggcgccatcatcacccagttcgagtatccg
atgtgcgagtcgctcgggctggtcaagatggacttcctgggcctgtccaacctgcacacg
ctcgaggacgctgtcgccaacatcaaggcgaaccgcggcgaggacctcgtcctcgaggac
ctgcccttcgacgacagggcgacctatgagctcatgggtcgcggagacacgctcggcgtc
ttccagctcgatggcggcggcatgcgcgcgctgctgcgctccatgctgccggaccagttc
gccgacatcaccgccgtctccgccctctaccgacccggcccgatgggcgccgactcgcac
aacaagtacgcccaccgcaagaacggccgcgagccgatcgagccgatccaccccgcgctc
gcggaggcgttggagccggtgctgggcgagacctacggcctgatcgtctatcaggagcag
gtgatggcgatcgcccaggtgctcgccggcttctccctgggcgccgcagacaatatgcgt
cgcgccatgggcaagaagaagaaggaggagctggacaagcagtacgccggcttcgaagcc
ggcatgctggagcgcggctatcccaaggacgcggtcaagacgctgtgggagatcctggtc
ccgttcgccgactacgcgttcaacaagtcccactccgccgcctacggcgtggtcacctac
tggaccgcctacctcaaggcgaactacccgaccgagtacatggccgcgctcctgacctcg
gtcaagaacgacaaggacaagatggcgatctatctcggcgagtgccgccggatgaagatc
aacgtcctgccccccgacgtcaacgagtcggcccacaacttcaccgccgtcggcaacgac
atccgcttcggcctgacagcggtgcgcaacgtcggctggaacgtcgtcgacgggatcgtc
agcgcccgcgaggagaagggccgctacgaggacttcaacgacttcctcgccaaggtgccg
gccacggcgtgcaacaagcgcgtgatcgagtcgctgatcaaggcgggtgccttcgacgac
atgaagcaccgccgccgcgccctggtcgccgtgcacgagacggctgtcgaccagttcgtc
gacatcaagcgcaacgaggcgatcggccaggactcgctcttcggcggcctcgacgacgac
ctcggtggctccttcggcgtctcggtgacgatccccgacatcgacgagtgggacaagatg
accctgctcggccacgagcgggagatgctcggcctctacgtctccgaccaccccctgttc
ggtctcgagcacgtcctcgccaacgggtccgactgcaccatcggacagctgctcggcgac
gagacccgtccgcacaacagcacgatcaccatctgcggcctggtcaccggggtgaaccgg
cggatcaccaagaagggtgatccgtgggcgaccgtcaccatcgaggatctcgagggagcc
atcgaggtgctcttcttccccagcagctacgtgctggcggctccgcacctgatcgaggac
gcgatcatccgggtcaagggtcagctctcccgggacaaggagcagccggagatccgcggc
caggaggtcagcgctccggacctgaccgatggcccgagcggtccggtggtggtgagtctg
cccgccacgcgatgcacgccgccggtggtggcacagctgcgggacgtgctcgccgcgcac
cccgggatgaccgaggtccggctacggttgctcacgcgtgagtccacccgggtgctgcgg
ctcgacgaccgtctccgcgtcaccccgagctcagcgctgttcgccgacctcaagcacctg
ttgggacctggatgtctgaccagctga
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