Nocardioides lacus: P5P86_18855
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Entry
P5P86_18855 CDS
T11404
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nlb Nocardioides lacus
Pathway
nlb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nlb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P5P86_18855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlb03021
]
P5P86_18855
03400 DNA repair and recombination proteins [BR:
nlb03400
]
P5P86_18855
Enzymes [BR:
nlb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P5P86_18855
Transcription machinery [BR:
nlb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P5P86_18855
DNA repair and recombination proteins [BR:
nlb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P5P86_18855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WGL52000
LinkDB
All DBs
Position
complement(4016074..4019874)
Genome browser
AA seq
1266 aa
AA seq
DB search
MLDVNFFDQLRIGLATADDIRTWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEDARHRDLSSLEAKVDQQRKMLTNRMDVAINDRAKKLEED
LAALEAEGAKADAKRKVRDGAEREMKQLRDRSEREIARLDEVWDTFKSLKVQDLMGDELL
YREMKNWFGKYFEGHMGATAIQKRLQTFDIEAEVENLRETIATGKGQRKVRALKRLKVVD
AFRKTGNSPQGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVSGPQLKLHQCGLPKQMALELFKPFVMKRLVDLSHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGRPVTMPSQDMIIGLFFLTADRDEQPGEGR
AFASQAEAVMAFDRREITLQSKIKIRLDTGEVLDTTLGRTIFNDTLPADYPFVNYEVGKK
QLGAIVNDLAERYTKVEVAASLDALKDNGFHWATRSGVTVSIDDVTTPANKAEILGEFES
KAAKIQKQFERGLVTDEERRQELVEIWTEAAKVVGQAMEDAFDKKNPIFMQVTSGASGNF
NQIRQVGAMRGLVANPKGEIIPRPIKANFREGLSVLEYFISTHGARKGLADTALRTADSG
YLTRRLVDVSQDVIIREEDCGTERGHLVDITSEDVETTAYARTAAEDVVHPTSGEVLAPA
GSDIGDVKIAELLEAGVTEVKVRSVLTCEAKTGTCAKCYGRSLATGKLVDIGEAVGIIAA
QSIGEPGTQLTMRTFHTGGVASADDITQGLPRVVELFEARTPKGVAPISEAAGRIEIEET
DKARKVLVKPDDGSDVIEYVVSRRSRLNVADGEHIEVGRTLTVGTPDPKEVLRILGVRAT
QQHLVDEVQSVYKSQGVSIHAKHIEIIVRQMLRRITVLESGETNLLPSDLVDRVKFETEN
RRVVSEGGKPASGRPELMGITKASLATESWLSAASFQETTRVLTDAAINGRSDSLRGLKE
NVIIGKLIPAGTGLERYRNIRVEPTEEARAAAYSVTGYDSYDYDFSNTGSGQAVALDDFD
FGSYQS
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgttaacttcttcgaccagcttcggatcggcctggccaccgcggacgacatc
cgcacctggagccacggcgaggtcaagaagccggagacgatcaactaccgcacgctcaag
cccgagcgtgacggcctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacccgctccaaggtgcgccgcgagcggatgggccacatcgagctcgccgccccc
gtgacccacatctggtacttcaagggtgtgccgtcgcggctgggctacctgctcgacctc
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcacctcggtcgac
gaggacgcgcgtcaccgcgacctgtcctcgctcgaggcgaaggtcgaccagcagcgcaag
atgctgacgaaccggatggacgtggcgatcaacgaccgcgccaagaagctcgaggaggac
ctcgcggccctcgaggccgagggtgccaaggccgacgccaagcgcaaggtccgcgacggc
gcggagcgggagatgaagcagctgcgtgaccgcagcgagcgcgagatcgcccgtctcgac
gaggtctgggacacgttcaagagcctcaaggtgcaggacctcatgggcgatgagctcctc
taccgcgagatgaagaactggttcggcaagtacttcgagggccacatgggcgccacggcg
atccagaagcgcctgcagaccttcgacatcgaggccgaggtcgagaacctgcgcgagacc
atcgccaccggcaagggtcagcgcaaggtccgcgccctcaagcggctcaaggtggtcgac
gcgttccgcaagaccggcaacagcccgcagggcatggtgctcgacgccgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgcctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtcgactcg
ctgttcgacaacggccgccgtggtcgtccggtgaccgggccgggcaaccgtccgctgaag
tcgctctccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtgtcggggccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctc
gtcgacctgtcgcacgcgcagaacatcaagtcggccaagcggatggtcgagcgtgctcgc
ccggtcgtgtgggacgtcctcgaagaggtcatcaccgagcaccccgtgctgctcaaccgc
gcgcccaccctgcaccgtctcggcatccaggcgttcgagccgcagctgatcgagggcaag
gccatccagctgcacccgctggtctgtggcgccttcaacgccgacttcgacggcgaccag
atggctgtccacctgccgctgtcggcggaggcccaggccgaggctcgcatcctgatgctc
tcgaccaacaacatcctcaagccgtcggacggtcgtccggtgaccatgccgtcgcaggac
atgatcatcggtctgttcttcctgaccgccgaccgtgacgagcagccgggtgagggccgc
gccttcgcctcgcaggccgaggccgtgatggccttcgaccgccgcgagatcacgctgcag
tcgaagatcaagatccggctcgacaccggcgaggtgctcgacaccacgctgggccgcacg
atcttcaacgacaccctgccggccgactaccccttcgtgaactacgaggtgggcaagaag
cagctcggtgcgatcgtcaacgacctggccgagcgctacaccaaggtcgaggtcgcggcg
tcgctggacgcgctgaaggacaacggcttccactgggcgacccgttcgggcgtcacggtc
tcgatcgacgacgtcaccacgccggcgaacaaggccgagatcctgggcgagttcgagtcc
aaggccgccaagatccagaagcagttcgagcgcggtctggtcaccgacgaggagcggcgt
caggagctcgtggagatctggaccgaggccgccaaggtggtcggccaggccatggaggac
gcgttcgacaagaagaacccgatcttcatgcaggtcacctccggtgcctcgggtaacttc
aaccagatccgtcaggtcggcgccatgcgaggcctggtggccaaccccaagggcgagatc
atcccgcgtccgatcaaggccaacttccgcgagggcctctccgtgctcgagtacttcatc
tcgacccacggtgcccgcaagggtctggccgacaccgcgctgcgtaccgccgactcgggt
tacctgacccgtcgtctggtggacgtctcgcaggacgtcatcatccgcgaggaggactgc
gggaccgagcgtggccacctggtcgacatcacgtccgaggacgtggagaccaccgcctac
gcccgcaccgccgccgaggacgtcgtccacccgaccagcggcgaggttctcgccccggcc
ggctcggacatcggtgacgtcaagatcgcggagctgctcgaggccggtgtcaccgaggtc
aaggtccgttcggtcctgacctgcgaggcgaagacgggtacctgcgccaagtgctacggc
cgctcgctggccaccggcaagctcgtcgacatcggcgaggccgtcggcatcatcgcggcc
cagtcgatcggtgagccgggcacgcagctgacgatgcgtaccttccacaccggtggtgtg
gcttcggcggacgacatcacgcagggtctgccccgcgtggtggagctcttcgaggcccgt
acgccgaagggcgtcgccccgatctcggaggccgcgggccggatcgagatcgaggagacc
gacaaggcccgcaaggtcctggtcaagcccgacgacggctccgacgtcatcgagtacgtc
gtgtcccgccgctcgcgactcaacgtcgccgacggcgagcacatcgaggtcggtcgcacc
ctcacggtcggtactcccgaccccaaggaggtcctgcgcatcctcggcgtccgcgccacc
cagcagcacctggtggacgaggtccagtcggtctacaagagccagggtgtgtcgatccac
gccaagcacatcgagatcatcgtgcggcagatgctgcgccggatcacggtgctggagtcc
ggtgagaccaacctgctcccgtccgacctggtggaccgggtcaagttcgagaccgagaac
cgtcgcgtcgtctccgagggcggcaagccggcctcgggtcgtccggagctgatgggcatc
accaaggcctcgctcgccaccgagtcgtggctctcggcggcctccttccaggagaccacc
cgggtgctcaccgacgcggcgatcaacggtcgttccgacagcctgcgtggcctgaaggag
aacgtgatcatcggtaagctcatcccggccggcaccggcctcgagcgctaccgcaacatc
cgggtcgagccgaccgaggaggcccgcgccgcggcctactcggtcaccggctacgacagc
tacgactacgacttcagcaacaccgggtcgggtcaggccgtcgcactggacgacttcgac
ttcggctcctaccagagctga
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