Nitrosospira lacus: EBAPG3_001380
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Entry
EBAPG3_001380 CDS
T04907
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
nlc
Nitrosospira lacus
Pathway
nlc00521
Streptomycin biosynthesis
nlc00523
Polyketide sugar unit biosynthesis
nlc00525
Acarbose and validamycin biosynthesis
nlc00541
Biosynthesis of various nucleotide sugars
nlc01100
Metabolic pathways
nlc01110
Biosynthesis of secondary metabolites
nlc01250
Biosynthesis of nucleotide sugars
Module
nlc_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
nlc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
EBAPG3_001380 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
EBAPG3_001380 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
EBAPG3_001380 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
EBAPG3_001380 (rfbB)
00525 Acarbose and validamycin biosynthesis
EBAPG3_001380 (rfbB)
Enzymes [BR:
nlc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
EBAPG3_001380 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
3Beta_HSD
Polysacc_synt_2
NAD_binding_4
Motif
Other DBs
NCBI-ProteinID:
ARO86544
UniProt:
A0A1W6SL79
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All DBs
Position
complement(322523..323587)
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AA seq
354 aa
AA seq
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MILVTGGAGFIGANFVLDWLAQSDEAIVNLDILTYAGNLENLAALAADERHIFVQGDIGD
SALITDLLTRHRPRAIINFAAESHVDRSIHGPEAFIQTNIVGTFRLLEAGRAYWNGLDGK
AKQDFRFLHVSTDEVYGSLATGEPAFNEAHRYEPNSPYSASKAASDHLVRAYHHTYGLPT
LTSNCSNNYGPYQFPEKLVPLIIVNALAGKPLPVYGDGLQVRDWLYVKDHCGAIRRALEA
GTPGETYNIGGWNEKPNIEIVHTICALLDTLRPLTIGPYRSLIAFVTDRPGHDRRYAIDA
SKVERELGWKPDETFETGIRKTVQWYLDNPAWVGNVQSGAYRTWVEKHYQGRTR
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgatactggttacaggaggtgccggattcatcggtgcgaattttgtattggattggctg
gcacaatccgacgaagcgattgtcaacctcgacatacttacctatgcgggtaatctggag
aatcttgccgcgctggcggcggatgagcggcatatcttcgtacagggcgacatcggtgat
tccgctctgattaccgatctgttgacgcgtcatcgaccccgcgccatcatcaatttcgct
gcggaaagccacgtggaccgctccatccatggcccggaggcttttatccagaccaatatc
gtgggtaccttccggctgctggaagctggccgggcctactggaacggactggacggtaaa
gcaaagcaggattttcgttttctccatgtttcgactgacgaagtttacggctccctggcc
acgggcgagccagcctttaatgaagcccatcgctatgagcctaatagtccctattcggca
agcaaagctgccagtgatcatctggttcgcgcctaccatcatacctacggtttgcccacg
ctgaccagtaactgttccaacaattatgggccgtatcaatttccggagaaactcgtccca
ttgataatcgtcaatgctctcgcgggcaaaccattgcctgtgtatggcgacggcctgcag
gtccgcgactggctttatgtcaaagaccattgcggtgccatccgcagggcgctggaagca
ggcactcccggagaaacatacaatataggtggctggaacgagaaacctaatattgaaatc
gtacacaccatatgcgcattactggatacgctaagaccgctcactatcggaccctaccgc
agcctgatcgccttcgtcaccgatcgtcctggtcatgatcgccgctatgcaatcgacgcg
agcaaagttgagcgtgagttgggctggaaacctgatgagacttttgaaactggcattcgc
aagaccgtgcagtggtatctcgacaatccggcctgggtcggaaatgtacaatccggggcc
tatcgcacctgggttgagaagcattaccagggacgcacccgatga
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