Nitrosospira lacus: EBAPG3_003165
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Entry
EBAPG3_003165 CDS
T04907
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nlc
Nitrosospira lacus
Pathway
nlc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nlc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EBAPG3_003165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlc03019
]
EBAPG3_003165
Enzymes [BR:
nlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EBAPG3_003165
Messenger RNA biogenesis [BR:
nlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EBAPG3_003165
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
HEM4
Statherin
Motif
Other DBs
NCBI-ProteinID:
ARO86849
UniProt:
A0A1W6SM18
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All DBs
Position
695308..696840
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AA seq
510 aa
AA seq
DB search
MSFDQLNLSPEILRAIADQGYTEPTPIQAQAIPPILEGKDIMGGAQTGTGKTAGFTLPML
HRLQPHANISVSPAKHPIRALILVPTRELAAQVYESVKTYGKYLPLKCAVVYGGVNIDPQ
VKELRAGVEILVATPGRLLDHIEQKTMNLSRIEILILDEADRMLDMGFMPDIKRILALIP
PQRQSLMFSATFSDEIKKLADKLLKQPVLIEVARRNSITELVTHVVHPIDRERKRELLTH
LIKSQDLKQVLVFVRTKHGAGRLAQQLERDGITATAIHGDKSQPQRTQALAEFKEGVVRV
LVATDVAARGLDIEDLPHVVNFELPTTPEDYVHRIGRTGRAGTKGDAISLVCEDEHELLE
GIEKLLKIKLNVEAVAGFEAETSRHPKGPVDDRHRPNRNEPARPEQKKQSESRRHPTEAH
PSSRSRELKKHEGSGEYRPGGRAKQPEDPLFTQPYTPSVKPSDTASGPSNGTASASIGGK
PSDHLRRGQQTKPLPALFMPRVLPKTKQDE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgatcaactcaacctatcccccgagatcctgcgtgccattgcggatcaaggc
tatacagaacctactcccatccaggcacaggctattccaccgatcctcgagggcaaggac
ataatggggggggcgcaaaccggcaccggtaaaaccgctggctttacccttcccatgctg
catcggttgcagccacatgccaatatcagcgtatcgcccgccaagcatccgattcgcgca
ctgattctggttcctacacgggaattggcggcgcaagtgtatgaaagcgtcaagacttac
ggtaaatacctgccgctcaaatgtgcggtggtgtacggcggcgtgaatatcgatccccag
gtgaaggagttgcgcgcgggcgtggagatcctggtagcgacaccgggacggttactggat
catatcgagcagaaaacgatgaatctctccaggatcgagattctgatattggatgaggct
gaccgcatgcttgacatgggtttcatgcccgacataaagcgtattcttgcgctgataccg
ccgcagcgtcaaagcctgatgttctccgccactttttccgacgagatcaaaaaactggca
gataagctgttaaaacaaccggtgctgatcgaagtggcacggcgcaattccatcaccgaa
ttggtgacccacgtcgtacatccgatcgaccgcgagcgtaaacgcgaattgctcacccac
ctcatcaagtcgcaagacttgaaacaggtgctggtatttgtccgtaccaagcatggcgcc
gggcgcctggctcagcagctggagcgcgacggcatcaccgcgacagcgattcatggcgat
aagagccagcctcaacgcacccaggcgctggcggaattcaaggaaggggtggtgcgggtt
ctggtggcaaccgacgttgccgcacgtggactggacatcgaagacctgccgcatgtcgtc
aacttcgaattacccacgacgccggaagattatgtccatcgaatcggccgcaccggccgc
gccggcaccaaaggcgacgcaatttccctggtatgcgaggatgagcatgaattactcgaa
ggtatcgagaaacttctgaaaatcaagctcaatgtggaggcggtggcaggattcgaggcg
gaaacgtcgcgtcacccaaagggaccggtagatgatcgccatcgacccaatcggaacgag
cccgccagaccggagcagaagaaacaatccgaatcccgcagacatcccactgaagcgcat
ccttcttcccgctccagggagctcaagaaacatgaaggatctggagagtacagaccaggg
ggacgcgccaagcagcccgaggatcccctatttacgcagccctatacgccatcggtaaaa
ccttccgataccgcctccggaccctctaacggaacggcatcggcatccatcgggggtaaa
ccatcggatcatctccgccgggggcagcaaaccaaacccctgcccgcgctattcatgccg
cgtgttctcccaaaaaccaagcaggacgagtaa
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