KEGG   Nitrosospira lacus: EBAPG3_004765
Entry
EBAPG3_004765     CDS       T04907                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
nlc  Nitrosospira lacus
Pathway
nlc00010  Glycolysis / Gluconeogenesis
nlc00020  Citrate cycle (TCA cycle)
nlc00260  Glycine, serine and threonine metabolism
nlc00280  Valine, leucine and isoleucine degradation
nlc00310  Lysine degradation
nlc00380  Tryptophan metabolism
nlc00620  Pyruvate metabolism
nlc00630  Glyoxylate and dicarboxylate metabolism
nlc00640  Propanoate metabolism
nlc00670  One carbon pool by folate
nlc00785  Lipoic acid metabolism
nlc01100  Metabolic pathways
nlc01110  Biosynthesis of secondary metabolites
nlc01120  Microbial metabolism in diverse environments
nlc01200  Carbon metabolism
nlc01210  2-Oxocarboxylic acid metabolism
nlc01240  Biosynthesis of cofactors
Module
nlc_M00009  Citrate cycle (TCA cycle, Krebs cycle)
nlc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
nlc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
nlc_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:nlc00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    EBAPG3_004765 (lpdA)
   00020 Citrate cycle (TCA cycle)
    EBAPG3_004765 (lpdA)
   00620 Pyruvate metabolism
    EBAPG3_004765 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    EBAPG3_004765 (lpdA)
   00640 Propanoate metabolism
    EBAPG3_004765 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    EBAPG3_004765 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    EBAPG3_004765 (lpdA)
   00310 Lysine degradation
    EBAPG3_004765 (lpdA)
   00380 Tryptophan metabolism
    EBAPG3_004765 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    EBAPG3_004765 (lpdA)
   00670 One carbon pool by folate
    EBAPG3_004765 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:nlc04147]
    EBAPG3_004765 (lpdA)
Enzymes [BR:nlc01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     EBAPG3_004765 (lpdA)
Exosome [BR:nlc04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   EBAPG3_004765 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Biotin_lipoyl Pyr_redox FAD_oxidored Pyr_redox_3 AlaDh_PNT_C NAD_binding_8 GIDA Biotin_lipoyl_2 FAD_binding_2 HI0933_like Thi4 GCV_H FAD_binding_3 RnfC_N DAO NQRA_N HlyD_D23 3HCDH_N
Other DBs
NCBI-ProteinID: ARO87135
UniProt: A0A1W6SMX0
LinkDB
Position
1081846..1083636
AA seq 596 aa
MTQLIEIKIPDIGDFTDVPVIELLVKPGDTVEKETSLITLETDKATMEIPAPQAGTVKEV
KVKIGDKVSEGTIILVLETAAKPAEPVKAPVSSSVPALESPAGVASAPAPVKPSPDIPQG
DIHADIVVLGAGPGGYTAAFRAADLGKKVVLIERYPALGGVCLNVGCIPSKALLHVAKVI
TEAEETERQGIVFGKPAIELNKLRTWKESVVGKLTKGLAGLAKQRKVRVVQGKGTFTSPN
MIQMETSDGLKTVSFESCIIAAGSSVARIPGFPYDDPRLMDSTGALKLDDIPQRMLIIGG
GIIGLEMATVYDALGCKISVVELMDQLIPGADADLVKPLYRRIQKRYEAIYLKTRVTRIE
AQEDGLSVTFESASDAVPAPEPQLYDRILMAVGRRPNGRDIGVGSAGVTVDERGYIPVNK
QLRTNVPHIFAIGDICGEPMLAHKASHEGKLAAEIIAGGEHTKEAAFDARAIPSVAYTDP
EIAWMGLTETEAGKQGIEYERAVFPWAASGRAIAMARDEGLTKLLLDKKTRRILGAGIVG
VNAGELIAETVLGLEMGADMEDIGLTIHPHPTLSETVFFAAEIAEGSITDLYMPKK
NT seq 1791 nt   +upstreamnt  +downstreamnt
atgactcagttgatcgaaataaaaatccctgatatcggagatttcacggatgttcccgtt
atcgaactgctggtgaagccgggtgatacggtggaaaaggaaacatcgcttatcacgctg
gaaaccgacaaggcgacgatggagattcccgcgcctcaagctggcacggtaaaggaggtc
aaggtcaagatcggcgataaggtttcggaggggacgatcatacttgtgctggaaacagca
gcgaaaccggctgagccggttaaagcgcccgtttcatcatctgtacctgctctcgagtcc
cctgcgggggtggcttcagcacctgcgccggttaagccctctcctgatattccgcagggt
gatattcatgccgatatcgtggtactcggtgcggggccgggcggttacacggctgcattt
cgcgccgccgacctgggcaagaaggtggtcctgatcgagcgttaccccgcccttggcggt
gtgtgcctcaatgtcggctgtattccctccaaggcactcctgcacgtggcgaaggtcatc
acggaggcggaggaaacggagcgtcaggggatcgttttcggcaagcccgccatagaactc
aataagctgcggacctggaaggaatccgtagtgggtaaactcaccaagggactggcaggg
ttggcgaagcagcgcaaggtgcgcgtggtacaaggaaagggcacattcacgtcacccaat
atgatccagatggagacatccgatggcctgaaaaccgtatctttcgagtcctgtatcatc
gctgcgggatccagcgtggcgcgtattcccggcttcccgtatgatgatccgcgactcatg
gattcgactggcgcgctgaaactggacgatattccgcagcgcatgctcatcattggcggg
ggcattatcggcctggaaatggcgaccgtttatgacgcgctcgggtgcaaaatcagtgtg
gtggagttgatggatcagttgatccccggcgcggacgcggatctcgtcaagccgttgtat
cggcgcatacagaaacgctacgaagcgatttacctgaaaaccagggttacccggatcgag
gcgcaagaggatggcttgagtgtcacattcgaaagcgcatccgatgctgttccggcacct
gaaccgcagctttatgatcgcattctaatggcagtggggcgtcgccccaatggccgcgat
atcggtgtgggaagtgccggggtcacagtggatgagcgcggctacatcccggtaaacaag
cagttgcgcaccaacgtgccgcacatattcgccattggcgatatttgcggcgagcctatg
ctggcgcacaaagcctcgcacgaaggcaagcttgccgcggaaatcatcgcgggtggggaa
cacacaaaagaggcggcattcgatgcacgcgccatcccgtcagtggcctacaccgatccg
gaaatcgcctggatgggcctgaccgaaaccgaagccggcaagcaaggcatcgagtacgaa
agagcagtgtttccctgggcagcgagcggccgcgcgatcgcaatggcgcgcgacgaaggg
ctgaccaaactgctgctggacaaaaagacccgccgtattcttggtgctggcatcgtgggg
gttaacgccggcgagctgatcgccgaaacggtgctggggcttgaaatgggcgcggatatg
gaagatattggtctcaccatccacccgcatcccaccctgtctgaaaccgtcttttttgcc
gccgaaattgcggaagggtcgattactgatctgtatatgccgaagaaatga

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