Nitrosospira lacus: EBAPG3_004960
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Entry
EBAPG3_004960 CDS
T04907
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nlc
Nitrosospira lacus
Pathway
nlc03420
Nucleotide excision repair
nlc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EBAPG3_004960
03430 Mismatch repair
EBAPG3_004960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nlc03400
]
EBAPG3_004960
Enzymes [BR:
nlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EBAPG3_004960
DNA repair and recombination proteins [BR:
nlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EBAPG3_004960
MMR (mismatch excision repair)
Other MMR factors
EBAPG3_004960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Viral_helicase1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ARO87170
UniProt:
A0A1W6SMZ4
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All DBs
Position
1125981..1128233
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AA seq
750 aa
AA seq
DB search
MSALISELNPEQLEAVTLPHQSALVLAGAGSGKTRVLTTRIAYLIQSGQVSPHGILAVTF
TNKAAKEMLVRIASMLPIDTRGMWVGTFHGLCNRMLRAHHQDAGLPQAFQILDSADQLAV
IKRLLKALGADDEKFPPRQVQWFINNAKEEGLRASQVETYDDFARKMVEFYRFYEQQCNK
EGVVDFAELLLRSYELLTRNEHLREHYRGRFDHVLVDEFQDTNRLQYKWLKLLAGNRAAV
FAVGDDDQSIYAFRGANTGNMKDFEKDFRISKIIKLEQNYRSHGNILDAANTLIRNNSGR
LGKNLWTSEGHGEPIRVYNAPTDFDEASFIVEEVKSLRAEGVVLSQIALLYRSNAQSRVL
EHALFNASLPYRVYGGMRFFERQEIKHALAYLRLIANPEDDNALLRIINFPVRGIGMRSV
EQLQDEAGRQGGSLWAAMGHKYRGDAAFGPNSGDKAQVRLESKPWLDKPKKGVEGFVALI
ESMRQVCEKLPLPEVVEHMLEHSRLAAYYRAEREGADRLENLNELINAATSFVHEAEDDS
LTAFLSHASLEAGEHQAGGGQEALQLMTVHSAKGLEFHSVFLSGLEEGLFPHDNSRNEVG
GVEEERRLMYVAVTRARRRLYLSFAQSRMLHGQTRYNIPSRFLHEIPDSLLKWLQPVQKV
AIRNEDWGTGRKGSGRVIHEPGHGVPARPADIRDSAASQWRIGQNVTHARFGAGVIVNCE
GHGADSRVEVRFGRTGTKWLLLEYAKLTPA
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcactaatttcagaattaaatcctgaacagcttgaagccgttactttgccgcac
cagtcagcgctggtgctggccggcgcaggcagcggcaagacgcgcgtactcactacccgt
attgcgtatttgatccagtctggtcaagtcagtcctcacggcatactagctgtcactttc
acgaataaggcggcgaaggaaatgcttgtccgcattgcttccatgctgccgatcgatacc
cgtggcatgtgggtaggaacgttccacggcctgtgcaaccgcatgctgcgcgcccaccat
caggatgccgggttgccgcaggcttttcagattctggattccgccgatcagctggcggtg
atcaagcgtttgctgaaggctctgggcgcggacgacgaaaagtttcccccccgccaggtg
caatggtttatcaataatgccaaggaagaagggctcagagcctcgcaggtcgaaacttac
gacgatttcgcacgcaagatggtggagttttatcgtttctacgagcagcagtgcaataag
gaaggcgtggtggattttgctgaactactgcttcgaagttatgagctgctgacacgcaac
gagcatttgcgcgagcactatcgtggccgctttgatcatgttctcgtggatgaatttcag
gataccaaccgcttgcaatacaagtggctgaagctgctcgccggcaaccgggccgcggta
tttgcggttggcgatgatgatcagagcatttatgcgttccgtggcgcgaacaccggtaat
atgaaagatttcgagaaagatttccgtatctctaaaatcatcaagctggagcagaactat
cgctcgcatggcaacattctggatgcggccaacacgctgatacgcaacaatagcggccga
ctcggcaaaaatctctggacatcggagggccatggcgaaccaatacgcgtgtataacgct
ccgaccgactttgacgaggcttccttcatcgtggaggaggtgaagtcgctacgcgccgaa
ggcgtcgtcctatcgcagatagccttgctgtaccgttccaatgcacagtcgcgcgtgctg
gagcatgctttgttcaatgcttcactgccgtatcgggtatatggcggcatgcgtttcttc
gaacgccaggaaatcaagcatgccctagcatatctgcgcctgatagcaaatcccgaggat
gataacgcactgctcaggattatcaattttcccgtacgcgggatcggcatgcgcagcgtg
gagcagctgcaggacgaggccgggcggcagggcggcagtttgtgggcggcaatggggcac
aagtatagaggtgatgcggccttcggcccgaattcgggagataaagcgcaggtcaggctt
gagagtaaaccgtggctggacaagccaaagaaaggagttgagggttttgttgcgctgatc
gagtcgatgcgtcaggtttgcgaaaaattgccattaccggaagtcgtcgaacatatgctg
gagcatagtagattggcggcatattatcgcgctgagcgcgagggagcggaccgcctggag
aatctgaacgagttaatcaatgccgccaccagcttcgtgcatgaagccgaggatgacagc
ctcacggcatttctgagtcatgcatcgctggaagcgggcgagcatcaggctggtggcggt
caggaagcgctgcagttgatgacggtgcactccgccaagggacttgaatttcacagtgta
tttctgagcggattggaagaaggtttgtttccccacgataatagccgcaacgaagtgggg
ggcgtggaagaggaaaggcgcttgatgtatgtagcagttacccgggcacgacggcgcttg
tatctgagttttgcccaaagccgcatgttgcatgggcagacccgctataacatcccctct
cgttttctgcacgaaattccggatagtttgctcaagtggctgcaacccgtgcaaaaggtg
gcgatcaggaatgaagactggggaaccggaaggaaagggtcaggccgggtaatccatgag
cctggtcatggcgttcctgctcgcccagcggatattcgagattcggcggcatcgcaatgg
cgcataggacagaatgtgactcacgccaggtttggcgcgggagtgatagtcaactgcgaa
ggtcacggtgcggattcccgtgttgaggtcaggttcggccgcaccggcacgaagtggtta
ttgctcgaatatgccaaactgacacctgcctga
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