Nitrosospira lacus: EBAPG3_006780
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Entry
EBAPG3_006780 CDS
T04907
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nlc
Nitrosospira lacus
Brite
KEGG Orthology (KO) [BR:
nlc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nlc03016
]
EBAPG3_006780
Enzymes [BR:
nlc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EBAPG3_006780
Transfer RNA biogenesis [BR:
nlc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EBAPG3_006780
Prokaryotic type
tRNA splicing ligases
EBAPG3_006780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ARO87497
UniProt:
A0A1W6SNX6
LinkDB
All DBs
Position
complement(1524817..1526238)
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AA seq
473 aa
AA seq
DB search
MDLTQLRQLQPYLWSFPLRPGEKRAEVLLYGTAPLLASMDDKVLEQIGNVASLPGLAGAA
MTMPDAHWGYGFPIGGVAAFDAEQGGVISAGGVGFDISCGIRCLRSNLDLHDATPGLTAL
ADILFRAIPAGVGEEGDIKLNPAQLDQVLQDGAHWAVRQGYGNTADLEYIEERGRVAGAI
PDNVSELAKKRQRGEMGTLGSGNHYLEVQVVERIHDEDAASAFGLHEGQIIISIHCGSRG
LGHQIGTDYLIMLAKAASRLGLPNRELACAPIKSPEGRQYIGAMNAAINCALANRQILTH
LTRIACAKAYPHAELETLFDVSHNTCKVETHEINGKDRLLHVHRKGATRAFGPGHAMLPE
RYRAVGQPVVIGGSMGTGSYILAGASGNQAFASSSHGAGRAMSRNKASARWQGRELISKL
AQQGILIRSRSMRGVAEEAPSAYKDVDLVAEATEQAGLARRVAFLRPKVCIKG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggatctgacccagttacgccagctgcaaccctacctctggagctttcccctccggccg
ggcgaaaagcgcgcggaagtgctgctttacggtaccgcgcccttgctggccagcatggat
gataaagtgctggagcaaattggcaatgtcgcttctctgcctggcttggctggtgccgcc
atgaccatgccggatgcgcactggggttacggatttcccatagggggtgtcgctgcgttc
gatgctgaacagggaggtgtaatctccgccggaggcgtgggcttcgatatttcatgcggc
attcggtgcctgcgcagtaatcttgatttgcatgacgccacgccaggcctaacggcgctt
gcagacatcctgttccgagcgattcccgctggcgtaggggaggaaggagacataaaattg
aatccggcgcagctcgatcaggtacttcaggatggtgcgcactgggccgtgcggcagggt
tatggcaacaccgcggatcttgaatacatagaggagcgcggtcgtgttgccggcgcgatt
ccagataatgtatcggaactggccaagaagcgccagcgcggagaaatgggcacgctgggt
tcaggcaatcactaccttgaggtgcaggtggtggagcgaattcatgatgaggatgccgca
tcggcttttggcctgcatgaaggccagattataatctcgatacactgcggctcgcgcggc
ctggggcatcaaatcggtaccgactacctcattatgctggccaaggcggccagtcggctt
ggcttacctaaccgggaactggcttgcgcaccgatcaaatctcccgaaggccggcaatac
atcggcgcgatgaatgccgccatcaattgtgcgctcgccaatcggcagattctgacccat
ctgacacgcatcgcttgcgcgaaagcttatcctcatgcggaattggaaaccttgttcgac
gtttcgcacaacacctgcaaggtggaaacccacgaaataaacggcaaggacagactgctc
catgtgcaccgcaaaggtgcgacgcgcgcattcggtccgggtcatgccatgttgccggaa
cgctaccgtgcagtaggccagccagtcgtcatcggtggaagcatgggcaccggctcatat
attctggccggtgccagcggaaatcaggcgttcgcctcgtcaagtcatggcgcgggccgc
gccatgagccgcaacaaggcatcggcacgctggcagggccgcgagctgatcagcaaactg
gcgcaacagggcatactgattcgctctcgttctatgcggggagtggcggaggaggctcca
agcgcatataaagacgtcgatttggttgcggaagcaacggaacaagcagggctcgcgcgc
cgagtcgcttttcttcgaccaaaagtgtgtattaagggataa
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