Nitrosospira lacus: EBAPG3_012655
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Entry
EBAPG3_012655 CDS
T04907
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nlc
Nitrosospira lacus
Pathway
nlc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nlc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EBAPG3_012655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlc03019
]
EBAPG3_012655
03009 Ribosome biogenesis [BR:
nlc03009
]
EBAPG3_012655
Enzymes [BR:
nlc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EBAPG3_012655
Messenger RNA biogenesis [BR:
nlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EBAPG3_012655
Ribosome biogenesis [BR:
nlc03009
]
Prokaryotic type
rRNA processing factors
EBAPG3_012655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ARO88551
UniProt:
A0A1W6SRX8
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All DBs
Position
2777839..2780640
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AA seq
933 aa
AA seq
DB search
MKRMLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEY
GGERHGFLPFKEISRSYFKDNADPARVRVQDVLHEGQELIVQVDKDERGTKGAALTTYIS
LAGRHLVLMPNNPRGGGVSRRIEGEDRAELRDVMSQLNVPPGMSIIARTAGIGRSEEELQ
WDLNYLLQLWRAIEDASKNQSGAFLIYQESSLVIRAIRDYFHQEIGEILIDTESIYEQAC
QFMSHVMPANVSRVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDHTEALVSV
DVNSARATRGSDIEQTALNTNLEAADEIARQLRLRDLGGLVVIDFIDMEITRNQREVENR
LHESLRYDRARVQMGKISRFGLLELSRQRLRPSLGESSYISCPRCHGTGHIRGTDSSALH
ILRIIQEEAMKENTAVLHAQVPVDVATYLLNEKRAEIHAIEARLKVNVILIPNIHLETPN
YNITRLRHDDVKLGEVQTSYQMVEKPAQEIALPSAAQEAKPARQQAAVRGITPSQPAPVR
EQKPPHREPQQLSFLDKIFGWFKQMSGEERKVHPEQVTTHPQRPERGRGRRDRVREGRDG
DYNEKLPRGNQRARDERGGEAPGVSGPARETAAQRPERGEAKLQGERSAQKKQQRAPREE
KIRIDAKLSAGEERPATEDSLQQSEDGGRRRRRGGRQRDRGERSERIPHESKQAGGRDLP
PQQAGSQATLEKSLPPTAVAIPEPIQETSEPIVASSSPAMELRPEPETTTTPASLQMEKT
IPPAAEPAVQDESLEPRSIPILVEPETASGIQPPTQESVLEPSSANAPSSATAVLKPFKN
EAEVEDEIPVPMIQSTFVPERVQSPQHQAPHAAETPNLAESGLIMIETTPEKIRPTEANV
VDEPAPAERRRKRPAPTPLVEHDEPLVQIETHK
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttatttaatgcgacacagccggaagaactccgtgtcgccattgtagac
ggtcagaagcttattgatctcgacattgaatccgccggcaaggaacaacgcaagagcaat
atttacaaggcagtcatcacccgtctcgagcccagtctcgaagccgcctttgttgagtat
ggcggcgaacgccacggttttcttccattcaaggaaatttcccgctcttacttcaaggac
aatgccgatccggcccgtgttcgcgttcaggatgtgctccatgaaggtcaggaactcatc
gtacaggtggataaggacgaacgcggaactaaaggtgctgcgcttactacctatatctcg
ctggcgggccgccatctggttctgatgcccaacaatccgcgcggcggcggtgtgtcacgc
cgcatcgaaggcgaagatcgggcggaactgcgtgacgtaatgtcacaattgaatgtccct
ccgggcatgagtattatcgcccgcaccgcgggaataggacgcagtgaagaagaactgcag
tgggatctgaattatctgctacaactgtggcgggccattgaagatgcctcaaaaaatcaa
agcggcgctttcctgatttaccaggaaagcagtcttgtgatccgcgccatccgtgattac
tttcatcaggagatcggcgaaatcctgattgataccgaaagcatctatgagcaggcctgt
cagttcatgagtcatgtcatgcccgccaacgttagccgcgtcaagctctatcgcgacgat
gtaccgttattttcacgtttccagatcgagcaccaaattgaaacggcctattcacgccag
gtgacgctaccctcgggcggcgcaatcgttatcgaccataccgaagccttggtatcggtc
gatgtaaattccgcacgtgccacgcgcggatccgatatcgagcaaaccgcgctgaacacc
aatttggaggccgccgatgaaattgcacggcaattgcgcctgcgtgacttgggcggattg
gtggtaattgactttatcgatatggaaatcacgcgcaatcagcgggaggtggagaatcgg
ctgcatgaatcactacgttatgatcgtgctcgcgtgcagatgggtaagatttcccgtttt
ggcctgctcgaattgtcgcgccagcgcttgcgcccttcgctgggtgagagcagttacatt
tcttgcccgcgttgccatggcacaggacacattcgtggtaccgattcctccgcattgcat
atcctccggatcatccaggaggaggcgatgaaggagaacaccgccgtgcttcacgcccag
gtaccggttgatgtcgccacctatctgctgaatgaaaaacgggcggaaatacatgccatc
gaagcacgattgaaggtaaatgtcatattaattccaaacattcacctggagacaccgaac
tacaatatcacccgtttgcgccatgacgatgtaaagcttggtgaagttcaaaccagctat
caaatggtagagaaaccggcacaggaaattgctctgccgtcggccgcacaggaagccaaa
cccgcacggcagcaggcagcggtgcgcggcatcacgccatcacagccggctccggtgcgc
gagcaaaaaccgccgcaccgggaaccccagcaactctcgtttctggataagatatttggc
tggttcaagcaaatgagtggtgaagaaaggaaagttcacccggaacaggtcacgacccac
ccccagcggccggagcgcggacgcgggcgacgcgatcgcgtccgtgagggacgcgatggt
gattacaatgaaaaactgccacgtggcaatcagcgcgcacgtgacgagcgcggcggcgag
gctccgggtgtttcgggtccagccagggaaacagcggctcagcggcccgagcgtggcgaa
gccaaacttcagggcgaacgatccgctcaaaaaaaacagcagcgcgcaccgcgtgaagag
aaaattcggatcgacgccaagttatctgcgggggaagagcgaccagcgaccgaagattcc
ttgcagcaaagcgaggacggcggacgccgccggcgtcgtggcggaagacagcgtgatcgg
ggtgaacgctcagaacgcattccgcacgaaagtaaacaagccggtgggcgagacctccct
ccacagcaggcgggcagtcaggctacgctcgaaaaaagccttccaccgacggcagtcgct
attcctgaacccatacaggagacatcagagcctattgttgcttcttcttcgcctgcaatg
gagttgcgcccagaaccggaaaccacaaccactcccgcatcattgcaaatggagaagact
atacccccggcagcggagccagcagtacaggatgaatcattggaaccgcgcagtattccg
atactggttgagccggaaaccgcgtcaggcatacagccgcccacgcaggaatccgttctg
gagccttcgtcagccaatgcgccctcttccgccaccgcggtcctgaaacccttcaagaat
gaagcggaagtagaggatgaaattcctgtgccaatgatccagtcaacattcgtaccggaa
cgggtacaatccccgcagcatcaagcaccgcatgcagccgaaacaccgaatctggctgaa
agtgggttgataatgatagagaccactccggaaaaaataagacccacggaggccaatgtg
gtggacgaaccggctccggcggagcggcggcgcaaaagacctgctccaacaccattagtg
gaacatgatgaaccgttagtacagatcgagacacataaatag
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