Nitrosospira lacus: EBAPG3_013300
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Entry
EBAPG3_013300 CDS
T04907
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nlc
Nitrosospira lacus
Pathway
nlc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nlc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EBAPG3_013300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlc03021
]
EBAPG3_013300
Transcription machinery [BR:
nlc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EBAPG3_013300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
ARO89146
UniProt:
A0A1W6STN3
LinkDB
All DBs
Position
complement(2915719..2917737)
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AA seq
672 aa
AA seq
DB search
MTTVAKLSTKASGRVTEIEKAVLAATEPSLLTAKIARAKAIKEGKNQAKDVEKSPLAPQD
IEARRMRLKNLIVQGKERGYLTYAEINDHLPDDMLDAEQIENIISMINDVGISVYDEAPD
AETLLMSETAPTVADEDVVEEAEAALSTVDSEFGRTTDPVRMYMREMGSVELLTRESEIE
IAKRIEDGLKHMIQAISACPTTIAGILDLADKVARDEMRIDELVDGLLDPNDQEMVSEEI
SDETLEQELGAENTEDEDIAAIASANLLKLKNDALERFAVIQQAYVEMQKALEKKGSTNK
AYKDIQESISAELMAIRFSAKMVERLCDTQRGLVDEMRGYERKIMELCVTKAGMPRNHFI
KGFPGNESNFDWVAQELAVGKPYSQTLGRYQPAILEQQENLLALQKRVGIPLKDLKEINR
RMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGQEPEPALL
AQKMEMPEEKIRKILKISKEPISMETPIGDDEDSHLGDFIEDSATMAPADAAVYASLRDV
TKDILDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR
SERLRSFLDTEG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
attacgaccgtcgcgaaattatccactaaagcatcaggccgcgtgacagaaatcgaaaaa
gcggtgctggcagctacggaacccagtttgcttaccgcgaaaatagccagagccaaggcg
ataaaggaaggcaagaatcaggcgaaagacgttgagaaatccccgctcgcgccacaagac
atcgaggcgcggcgcatgcgcttgaagaatctcatcgtgcagggcaaggagcgcggctat
ctgacttatgccgagatcaatgatcatcttcccgatgacatgctggatgccgagcagatc
gaaaacatcatcagcatgatcaatgatgtaggaatttctgtttatgatgaggcgcccgac
gcggaaacactgctgatgtccgaaaccgcgccgacggtagccgatgaggacgtagtggaa
gaagccgaggcggcgctttccaccgtggattccgaatttggacgtaccaccgatccggtg
cgcatgtatatgcgggaaatgggttcggtggaactgctcacgcgcgagagcgaaatcgaa
attgcaaagcgtatcgaggatggattgaagcatatgatccaggcaatttccgcctgtccg
accaccatagctggaatactcgatctcgccgacaaggtggcgcgggacgagatgcgtatt
gatgaattggtggatggattgctggacccgaatgaccaggaaatggtcagcgaggaaatc
tccgatgaaacgctggaacaggaattgggtgcggaaaatacggaagatgaagatatcgcc
gcgatagcaagcgctaatttactcaagctgaaaaatgatgcgctggagcgctttgcggtg
attcagcaggcctatgtggagatgcagaaagcgctggaaaaaaagggttccaccaataag
gcgtacaaggacatacaggagagtatctcagccgaacttatggccattcgcttctccgcg
aaaatggtggagaggctctgcgacactcagcgtggcctggtggatgagatgcgcggctac
gagcgcaagatcatggagctatgtgtaaccaaggcgggtatgccgcgtaatcactttatc
aaaggctttccaggtaacgagagcaattttgactgggtggcacaggaactggcggtgggc
aagccgtatagccagaccctgggacgctaccagccggctatcctcgaacagcaggagaat
ctgctggcgctgcagaagcgcgtgggtattccgctcaaagacctcaaggaaatcaaccgg
cgcatgtccaccggcgaggccaaggcgcgccgtgccaaacgcgagatgacagaagccaat
ttgcggctggtgatttccatcgccaaaaaatataccaatcgcgggctgcaattccttgac
ctcatccaggaaggcaatatcgggctcatgaaagcggtggacaagtttgaatatcggcgg
ggttacaagttttcgacttatgccacctggtggattcgtcaggccattacccgctccatc
gccgatcaggcgcgcaccatccgtattccggtgcacatgatcgaaaccatcaacaagatg
aatcgcatttcgcgccagattctgcaggaaaccggacaggagccggaaccggcgctgctg
gcgcagaaaatggaaatgccggaagagaaaatccgcaaaatcctcaagatttccaaggag
ccgatctccatggagacacccatcggcgacgacgaggattcccacctgggtgattttatc
gaggactcggccaccatggcgccggcggacgccgcggtctacgccagcctgcgggatgtc
accaaggacatactggattccctgacgccgcgtgaagcaaaagtactgcgcatgcgtttc
ggcatcgaaatgaataccgatcacacgctggaggaggtcggaaaacaatttgatgtgacc
cgtgagcgcattcggcagatagaagccaaggcgctacgcaaattgcgccatccttcacgt
tccgagcgcctgcgcagttttctggataccgaaggctga
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