KEGG T03265: 100586440

Nomascus leucogenys (northern white-cheeked gibbon): 100586440

Entry

100586440         CDS       T03265

Symbol

SMARCC1

Name

(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1

K11649

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C

Organism

nle Nomascus leucogenys (northern white-cheeked gibbon)

Pathway

nle03082

ATP-dependent chromatin remodeling

nle04714

Thermogenesis

nle05225

Hepatocellular carcinoma

Brite

KEGG Orthology (KO) [BR:nle00001]
09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    100586440 (SMARCC1)
09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    100586440 (SMARCC1)
09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    100586440 (SMARCC1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nle03021]
    100586440 (SMARCC1)
   03036 Chromosome and associated proteins [BR:nle03036]
    100586440 (SMARCC1)
Transcription machinery [BR:nle03021]
Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     100586440 (SMARCC1)
Chromosome and associated proteins [BR:nle03036]
Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    100586440 (SMARCC1)
   PBAF complex
    100586440 (SMARCC1)
   GBAF(ncBAF) complex
    100586440 (SMARCC1)

SSDB

Motif

Pfam:

SWIRM-assoc_2 SWIRM-assoc_3 SWIRM-assoc_1 SWIRM Myb_DNA-binding Myb_DNA-bind_6 HEAT_GCN1 Chromo BRCT_2 DUF919 SpeFL

Other DBs

NCBI-GeneID:

100586440

NCBI-ProteinID:

XP_030667764

Ensembl:

ENSNLEG00000006349

LinkDB

Position

4:103884296..104083223

AA seq 1105 aa
MAAPAGGGGQAAAVGATGSGVAAAAAGLAVYRRKDGGPATKFWESPETVSQLDSVRVWLG
KHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCH
ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKL
ANKLKDIIKRHQGTFTDEKSKASHHIYPYSSSQDDEEWLRPVMRKDKQVLVHWGFYPDSY
DTWVHSNDVDAEIEDPPIPEKPWKVHVKWILDTDIFNEWMNEEDYEVDENRKPVSFRQRI
STKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKE
EDEQEDLTKDMEDPTPVPNIEEVVLPKNVNLKKDSENTPVKGGTVADLDEQDEETVTAGG
KEDEDPAKGDQSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNK
SKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVD
PESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFG
LRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILH
FLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALE
EFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEEK
MEADPDGQQPEKAENKVENETDEGDKAQGGENEKNSEKEQDSEVSEDTKSEEKETEENKE
LTDTCKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLV
ETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQ
QQHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGP
GSMMPGQHMPGRMIPTVAANIHPSGSGPTPPGMPPMPGNMLGPRVPLTAPNGMYPPPPQQ
QPPPPPPADGVPPPPAPGPPASAAP

NT seq 3318 nt +upstreamnt +downstreamnt
atggccgcaccggcgggcggcggcgggcaggcggcagcggtaggcgccacgggctcgggg
gtcgcggcggcagccgcaggcctagctgtttatcggcggaaagatgggggcccggccacc
aagttttgggagagcccggagacggtgtcccagctggattcggtgcgggtctggctgggc
aagcactacaagaagtatgttcatgcagatgctcctaccaataaaacactggctgggctg
gtggtgcagcttcttcagttccaggaagatgcctttgggaagcatgtcaccaacccggcc
ttcaccaaactccctgcaaagtgtttcatggatttcaaagctggaggcaccttatgtcac
attcttggggctgcttacaagtataaaaatgaacagggatggcggaggtttgacctgcag
aacccatctcgaatggatcgtaatgtggaaatgtttatgaacattgaaaaaacattggtg
cagaacaattgtttgaccagacccaacatctacctcattccagacattgatctgaagttg
gctaacaaattgaaagatatcatcaaacgacatcagggtacatttacggatgagaagtca
aaagcttcccaccacatttacccatattcttcctcacaagacgatgaagaatggttgaga
ccagtgatgagaaaagacaagcaagtgttagtgcattggggcttttatccagacagctat
gatacttgggtccatagtaatgatgttgatgctgaaattgaagatccgccaattccagaa
aagccatggaaggttcatgtgaaatggattttggacactgatattttcaatgaatggatg
aatgaggaggattatgaggtggatgaaaataggaagcctgtgagttttcgtcagcggatt
tcaaccaagaatgaagagccagtcagaagtccagaaagaagagatagaaaagcatcagct
aatgctcgaaagaggaaacattcgccttcgcctccccctccgacaccaacagaatcacgg
aagaagagtgggaagaaaggccaagctagcctttatgggaagcgcagaagtcagaaagag
gaagatgagcaagaagatctaaccaaggatatggaagacccaacacctgtacccaatata
gaagaagtagtacttcccaaaaatgtgaacctaaagaaagatagtgaaaatacacctgtt
aaaggaggaactgtagcggatctagatgagcaggatgaagaaacagtcacagcaggagga
aaggaagatgaagatcctgccaaaggtgatcagagtcgatcagttgaccctggggaagat
aatgtgacagagcagaccaatcacattattattcctagttatgcatcatggtttgattat
aactgtattcatgtgattgaacggcgtgctcttcctgagttcttcaatggaaaaaacaaa
tccaagactccagaaatatacttggcataccgaaattttatgatagacacgtatcgccta
aacccccaagagtatttaactagcactgcttgtcggaggaacttgactggagatgtgtgt
gctgtgatgagggtccatgcctttttagagcaatggggactcgttaattaccaagttgac
ccggaaagtagacccatggcaatgggacctcctcctactcctcattttaatgtattagct
gataccccctctgggcttgtgcctctgcatcttcgatcacctcaggttcctgctgctcaa
cagatgctaaattttcctgagaaaaacaaggaaaaaccaattgatttgcagaactttggt
ctccgtactgacatttactccaagaaaacattagcaaagagtaaaggtgctagtgctgga
agagaatggactgaacaggagacccttcttctcctggaggccctggagatgtacaaggat
gattggaacaaagtgtcggaacatgttggaagtcgtactcaggatgaatgcatcctccac
tttttgagacttcccattgaggacccataccttgagaattcagatgcttcccttgggcct
ttggcctaccagcctgtcccctttagtcagtcaggaaatccagtcatgagtactgttgct
tttttggcatctgtggtggaccctcgcgtggcatctgctgcagcaaaagcggctttggag
gagttttctcgggtccgggaggaggtaccactggaattggttgaagctcatgtcaagaaa
gtacaagaagcagcacgagcctctgggaaagtggatcccacctacggtctggagagcagc
tgcattgcaggcacagggcctgatgagccagagaagcttgaaggagctgaagaggaaaaa
atggaagccgaccctgatggtcagcagcctgaaaaggcagaaaataaagtggaaaatgaa
accgatgaaggtgataaagcacaaggtggagaaaatgaaaaaaatagtgaaaaggaacag
gatagtgaagtgagtgaggataccaaatcagaagaaaaggagactgaagagaacaaagaa
ctcactgatacatgtaaagaaagagaaagtgatactgggaagaagaaagtagaacatgaa
atttctgaaggaaatgttgccacagccgcagcagctgctcttgcctcagcagctaccaaa
gccaagcacctggctgcagtggaagaaagaaagatcaagtccctggtagctctcttggtt
gagacacaaatgaagaaactagagatcaaacttcgacattttgaagagctggaaactatc
atggacagggagaaagaagctctagaacaacagaggcagcagttgcttactgaacgccaa
aacttccacatggaacagctgaagtatgctgaattacgagcacgacagcaaatggaacag
cagcagcatggccagaaccctcaacaggcacaccagcactcaggaggacctggcctggcc
ccacttggagcagcaggtcaccctggcatgatgcctcatcaacagccccctccctaccct
ctgatgcaccaccagatgccaccacctcatccaccccagccaggtcagataccaggccca
ggttccatgatgcccgggcagcacatgccaggccgcatgattcccactgttgcagccaac
atccacccctctgggagtggccctacccctcctggcatgccgccaatgccaggaaacatg
ttaggaccccgggtacccctgacagcacctaacggcatgtatccccctccaccacagcag
cagccgccgccgccaccacctgcagatggggtccctccgcctcctgctcctggcccgcca
gcctcagctgctccttag

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